KEGG   PATHWAY: pvp03030
Entry
pvp03030                    Pathway                                
Name
DNA replication - Pteropus vampyrus (large flying fox)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pvp03030  DNA replication
pvp03030

Organism
Pteropus vampyrus (large flying fox) [GN:pvp]
Gene
105288302  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
105288369  MCM6; LOW QUALITY PROTEIN: DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
105288711  [KO:K10739]
105289261  RFC5; replication factor C subunit 5 [KO:K10756]
105290689  RPA2; replication protein A 32 kDa subunit [KO:K10739]
105290721  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
105291600  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
105291850  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
105292634  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
105293309  [KO:K10756]
105294089  RPA3; replication protein A 14 kDa subunit isoform X1 [KO:K10740]
105295914  RFC1; replication factor C subunit 1 isoform X4 [KO:K10754]
105297784  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
105297888  POLA2; DNA polymerase alpha subunit B isoform X2 [KO:K02321]
105298882  RNASEH2B; ribonuclease H2 subunit B isoform X2 [KO:K10744]
105299404  PCNA; proliferating cell nuclear antigen [KO:K04802]
105299555  POLE; DNA polymerase epsilon catalytic subunit A isoform X3 [KO:K02324] [EC:2.7.7.7]
105299670  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
105300093  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
105301659  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
105301780  [KO:K02327] [EC:2.7.7.7]
105302562  PRIM1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
105302774  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
105302822  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
105303630  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
105304204  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
105304792  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
105307097  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
105307167  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
105307810  RFC4; replication factor C subunit 4 [KO:K10755]
105308745  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
105309247  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
105309921  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
105310222  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
111746329  RPA4; LOW QUALITY PROTEIN: replication protein A 30 kDa subunit [KO:K10741]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system