KEGG   PATHWAY: pvp03050
Entry
pvp03050                    Pathway                                
Name
Proteasome - Pteropus vampyrus (large flying fox)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pvp03050  Proteasome
pvp03050

Other DBs
GO: 0000502
Organism
Pteropus vampyrus (large flying fox) [GN:pvp]
Gene
105289192  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
105290037  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
105290124  PSMC1; 26S proteasome regulatory subunit 4 [KO:K03062]
105290624  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
105290990  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 isoform X1 [KO:K03037]
105291055  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
105291754  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
105291960  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
105292097  POMP; LOW QUALITY PROTEIN: proteasome maturation protein [KO:K11599]
105292262  PSMA8; proteasome subunit alpha type-7-like isoform X2 [KO:K02731] [EC:3.4.25.1]
105294208  SEM1; 26S proteasome complex subunit SEM1 [KO:K10881]
105294664  PSME4; proteasome activator complex subunit 4 isoform X2 [KO:K06699]
105294870  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
105295499  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
105297267  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
105297704  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 isoform X1 [KO:K03035]
105297724  PSMC5; 26S proteasome regulatory subunit 8 isoform X1 [KO:K03066]
105300193  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 isoform X2 [KO:K03031]
105300217  PSMC4; 26S proteasome regulatory subunit 6B [KO:K03063]
105300529  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
105300531  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
105300965  PSMB9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
105300968  [KO:K02740] [EC:3.4.25.1]
105301262  IFNG; interferon gamma [KO:K04687]
105301411  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
105301482  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
105303190  PSMA6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
105303219  PSMA2; proteasome subunit alpha type-2 isoform X1 [KO:K02726] [EC:3.4.25.1]
105303717  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
105303837  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 isoform X1 [KO:K03029]
105303843  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
105305740  PSMB10; proteasome subunit beta type-10 isoform X2 [KO:K02733] [EC:3.4.25.1]
105306136  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
105306269  PSME3; proteasome activator complex subunit 3 isoform X1 [KO:K06698]
105307005  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
105307210  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
105307329  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
105307466  [KO:K02731] [EC:3.4.25.1]
105307510  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
105308386  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
105308532  PSMF1; proteasome inhibitor PI31 subunit isoform X1 [KO:K06700]
105308921  PSMA3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
105309288  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
105309810  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
105310885  PSME1; proteasome activator complex subunit 1 [KO:K06696]
105310983  [KO:K06697]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
pvp04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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