KEGG   PATHWAY: rde00920
Entry
rde00920                    Pathway                                
Name
Sulfur metabolism - Roseobacter denitrificans
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
rde00920  Sulfur metabolism
rde00920

Module
rde_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rde00920]
rde_M00595  Sulfur oxidation, SOX system, thiosulfate => sulfate [PATH:rde00920]
Other DBs
GO: 0006790
Organism
Roseobacter denitrificans [GN:rde]
Gene
RD1_0376  cysQ; 3'(2'),5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
RD1_0738  [KO:K21310] [EC:2.1.1.334]
RD1_0784  [KO:K17218] [EC:1.8.5.4]
RD1_0884  [KO:K17226]
RD1_0894  [KO:K17226]
RD1_0934  mst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
RD1_0973  dmsC; anaerobic dimethyl sulfoxide reductase, C subunit, putative [KO:K21309]
RD1_0974  [KO:K21308]
RD1_0975  phsA; thiosulfate reductase, putative [KO:K21307] [EC:1.8.5.6]
RD1_0982  tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551]
RD1_0983  tauB; taurine ABC transporter, ATP-binding protein [KO:K10831] [EC:7.6.2.7]
RD1_0984  tauC; taurine ABC transporter, permease protein [KO:K15552]
RD1_1129  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
RD1_1511  soxX; monoheme cytochrome c SoxX [KO:K17223] [EC:2.8.5.2]
RD1_1512  soxY; sulfur oxidation Y protein [KO:K17226]
RD1_1513  soxZ; sulfur oxidation Z protein [KO:K17227]
RD1_1514  soxA; diheme cytochrome c SoxA [KO:K17222] [EC:2.8.5.2]
RD1_1515  soxB; sulfur oxidation B protein [KO:K17224] [EC:3.1.6.20]
RD1_1516  soxC; sulfite dehydrogenase SoxC protein [KO:K17225]
RD1_1517  soxD; diheme cytochrome c SoxD [KO:K22622] [EC:1.8.2.6]
RD1_1519  soxF; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [KO:K17229] [EC:1.8.2.3]
RD1_1939  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
RD1_2288  [KO:K17486] [EC:2.1.1.269]
RD1_2299  cysB; cysteine synthase [KO:K01738] [EC:2.5.1.47]
RD1_2378  sbp; selenium binding protein [KO:K17285] [EC:1.8.3.4]
RD1_2566  [KO:K28067]
RD1_2640  mdeA; methionine gamma-lyase [KO:K10764] [EC:2.5.1.-]
RD1_2784  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
RD1_2941  cysK; O-acetylserine sulfhydrylase [KO:K01738] [EC:2.5.1.47]
RD1_2966  cysI; sulfite reductase [KO:K00381] [EC:1.8.1.2]
RD1_2967  cysH; phosophoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
RD1_3015  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
RD1_3417  [KO:K20035] [EC:1.3.99.41]
RD1_3674  [KO:K01738] [EC:2.5.1.47]
RD1_3969  [KO:K20035] [EC:1.3.99.41]
RD1_3974  [KO:K20034] [EC:6.2.1.44]
RD1_B0030  sat; sulfate adenylyltransferase [KO:K00958] [EC:2.7.7.4]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00163  Propanoate
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00511  Acrylic acid
C00580  Dimethyl sulfide
C00894  Propenoyl-CoA
C00979  O-Acetyl-L-serine
C01013  3-Hydroxypropanoate
C01118  O-Succinyl-L-homoserine
C01180  4-Methylthio-2-oxobutanoic acid
C01861  Trithionate
C02084  Tetrathionate
C03172  S-Methyl-L-methionine
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22315  (2R)-2-Hydroxy-4-(methylsulfanyl)butanoate
C22316  (2R)-4-(Dimethylsulfaniumyl)-2-hydroxybutanoate
C22834  Protein-trisulfide
C23001  3-Aminopropyl(dimethyl)sulfanium
C23002  3-Dimethylsulfoniopropionaldehyde
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
rde00260  Glycine, serine and threonine metabolism
rde00270  Cysteine and methionine metabolism
rde00640  Propanoate metabolism
rde00680  Methane metabolism
rde00720  Other carbon fixation pathways
KO pathway
ko00920   

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