KEGG   PATHWAY: rfq03050
Entry
rfq03050                    Pathway                                
Name
Proteasome - Rhinolophus ferrumequinum (greater horseshoe bat)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
rfq03050  Proteasome
rfq03050

Other DBs
GO: 0000502
Organism
Rhinolophus ferrumequinum (greater horseshoe bat) [GN:rfq]
Gene
117013601  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
117017517  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
117013701  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
117013068  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
117037171  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
117035195  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
117030089  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
117026209  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
117035552  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
117026307  26S proteasome complex subunit SEM1 [KO:K10881]
117012373  SEM1; LOW QUALITY PROTEIN: 26S proteasome complex subunit SEM1 [KO:K10881]
117014352  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
117012592  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
117025877  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
117015824  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
117012418  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
117027993  26S proteasome regulatory subunit 4-like [KO:K03062]
117023427  PSMC1; 26S proteasome regulatory subunit 4 [KO:K03062]
117013398  PSMC5; LOW QUALITY PROTEIN: 26S proteasome regulatory subunit 8 [KO:K03066]
117021101  26S proteasome regulatory subunit 10B-like [KO:K03064]
117023037  PSMC6; 26S proteasome regulatory subunit 10B isoform X1 [KO:K03064]
117031327  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
117035480  PSMC4; 26S proteasome regulatory subunit 6B [KO:K03063]
117022772  PSME1; proteasome activator complex subunit 1 [KO:K06696]
117022773  PSME2; proteasome activator complex subunit 2 [KO:K06697]
117012843  PSME3; proteasome activator complex subunit 3 [KO:K06698]
117032877  PSME4; proteasome activator complex subunit 4 [KO:K06699]
117022917  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
117037527  LOW QUALITY PROTEIN: proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
117012291  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
117033749  LOW QUALITY PROTEIN: proteasome subunit alpha type-2-like [KO:K02726] [EC:3.4.25.1]
117018887  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
117031647  proteasome subunit alpha type-4-like [KO:K02728] [EC:3.4.25.1]
117011882  PSMA8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
117016329  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
117015133  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
117030834  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
117023400  PSMA3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
117013462  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
117031784  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
117013342  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
117025161  proteasome subunit beta type-2-like [KO:K02734] [EC:3.4.25.1]
117027590  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
117024109  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
117019069  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
117014308  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
117020462  PSMB9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
117032663  proteasome subunit beta type-10-like [KO:K02733] [EC:3.4.25.1]
117034797  PSMB10; proteasome subunit beta type-10 [KO:K02733] [EC:3.4.25.1]
117015676  PSMB8; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
117023937  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
117029185  IFNG; interferon gamma [KO:K04687]
117015907  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
117017951  proteasome maturation protein-like [KO:K11599]
117033088  proteasome maturation protein [KO:K11599]
117012104  proteasome maturation protein-like [KO:K11599]
117035032  proteasome maturation protein-like [KO:K11599]
117013976  proteasome maturation protein-like [KO:K11599]
117021739  POMP; proteasome maturation protein [KO:K11599]
117017554  proteasome maturation protein-like [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
rfq04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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