KEGG   PATHWAY: rfq04120
Entry
rfq04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Rhinolophus ferrumequinum (greater horseshoe bat)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
rfq04120  Ubiquitin mediated proteolysis
rfq04120

Other DBs
GO: 0016567
Organism
Rhinolophus ferrumequinum (greater horseshoe bat) [GN:rfq]
Gene
117013762  UBB; polyubiquitin-B [KO:K04551]
117017557  UBC; polyubiquitin-C [KO:K08770]
117019171  LOW QUALITY PROTEIN: ubiquitin-like [KO:K02927]
117020211  ubiquitin-like [KO:K02927]
117035057  ubiquitin-60S ribosomal protein L40-like isoform X1 [KO:K02927]
117037770  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
117024460  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
117017452  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
117033305  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
117012346  ubiquitin-40S ribosomal protein S27a [KO:K02977]
117013835  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
117015706  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
117030955  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
117021903  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
117035127  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
117034558  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
117036802  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
117036540  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
117022349  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
117026823  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
117016562  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
117015700  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
117030030  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
117037254  ubiquitin-conjugating enzyme E2 C-like isoform X1 [KO:K06688] [EC:2.3.2.23]
117032234  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
117022026  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
117036436  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
117016831  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
117026272  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
117014980  ubiquitin-conjugating enzyme E2 E3-like [KO:K20217] [EC:2.3.2.23]
117036596  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
117022871  ubiquitin-conjugating enzyme E2 E1-like [KO:K20217] [EC:2.3.2.23]
117037272  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
117026212  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
117027253  NEDD8-conjugating enzyme UBE2F-like [KO:K10687] [EC:2.3.2.34]
117013417  UBE2G1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
117012449  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
117018226  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
117019598  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
117020186  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
117027271  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
117022042  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
117033389  ubiquitin-conjugating enzyme E2 L3-like isoform X1 [KO:K04552] [EC:2.3.2.23]
117015137  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
117030860  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
117017467  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
117024972  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
117030200  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
117034625  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
117029155  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
117013047  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
117025248  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
117018851  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
117015159  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
117023625  ubiquitin-conjugating enzyme E2 R1-like [KO:K02207] [EC:2.3.2.23]
117031488  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
117038181  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
117034840  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
117027355  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
117034057  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
117012712  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
117033398  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
117018814  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
117018069  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
117013738  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
117016737  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
117016192  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
117034130  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
117034783  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
117025936  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
117023940  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
117038757  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
117023705  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
117033601  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
117023460  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
117018951  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
117022044  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
117036054  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
117029902  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
117026834  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
117019800  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
117017300  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
117030310  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
117015739  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
117033422  E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
117029053  MDM2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
117029983  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
117036582  CBLB; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
117034324  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
117020770  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
117034770  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
117023255  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
117030261  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
117025303  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
117014755  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
117022336  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
117030524  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
117030766  BIRC3; baculoviral IAP repeat-containing protein 3 isoform X1 [KO:K16060]
117021889  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
117029051  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase XIAP-like [KO:K04725] [EC:2.3.2.27]
117016131  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
117023063  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
117011655  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
117014828  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
117038101  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
117030208  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
117026558  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
117037044  AIRE; autoimmune regulator [KO:K10603]
117019788  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
117013957  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
117033113  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
117027820  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
117031902  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
117014094  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
117029081  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
117018094  CUL1; cullin-1 isoform X1 [KO:K03347]
117034454  S-phase kinase-associated protein 1 [KO:K03094]
117036135  S-phase kinase-associated protein 1-like [KO:K03094]
117017062  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
117035968  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
117016648  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
117025370  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
117037788  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
117027247  FBXO2; F-box only protein 2 [KO:K10099]
117024490  FBXO4; F-box only protein 4 [KO:K10291]
117022486  CUL2; cullin-2 [KO:K03870]
117034058  ELOC; elongin-C [KO:K03872]
117025705  elongin-B [KO:K03873]
117019481  ELOB; elongin-B [KO:K03873]
117037218  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
117025826  CUL3; cullin-3 isoform X1 [KO:K03869]
117037884  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
117032256  KLHL9; kelch-like protein 9 [KO:K10447]
117025937  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
117036078  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
117038072  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
117020580  CUL4B; cullin-4B isoform X1 [KO:K10609]
117021316  CUL4A; cullin-4A isoform X1 [KO:K10609]
117029867  DDB1; DNA damage-binding protein 1 [KO:K10610]
117029994  DDB2; DNA damage-binding protein 2 [KO:K10140]
117025232  ERCC8; LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8 [KO:K10570]
117018825  DET1; DET1 homolog isoform X1 [KO:K10571]
117037322  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
117030593  CUL5; cullin-5 isoform X1 [KO:K10612]
117019816  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
117014077  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
117016420  CUL7; cullin-7 [KO:K10613]
117017416  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
117013690  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
117032094  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
117027007  CDC20; cell division cycle protein 20 homolog [KO:K03363]
117037917  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
117019295  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
117013276  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
117022316  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
117017580  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
117021691  CDC16; cell division cycle protein 16 homolog [KO:K03353]
117017275  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
117016857  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
117028568  anaphase-promoting complex subunit 10-like [KO:K03357]
117037975  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
117031696  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
117036857  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
117030242  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
117035981  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
rfq03050  Proteasome
KO pathway
ko04120   
LinkDB

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