KEGG   PATHWAY: rok02010
Entry
rok02010                    Pathway                                
Name
ABC transporters - Roseovarius sp. AK1035
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
rok02010  ABC transporters
rok02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Roseovarius sp. AK1035 [GN:rok]
Gene
RAK1035_0011  [KO:K24821]
RAK1035_0068  [KO:K02011]
RAK1035_0091  [KO:K11963]
RAK1035_0092  [KO:K11962]
RAK1035_0093  [KO:K11961]
RAK1035_0094  [KO:K11960]
RAK1035_0095  [KO:K11959]
RAK1035_0108  [KO:K01999]
RAK1035_0193  [KO:K10107]
RAK1035_0194  [KO:K09689] [EC:7.6.2.12]
RAK1035_0255  [KO:K02041] [EC:7.3.2.2]
RAK1035_0256  [KO:K02044]
RAK1035_0257  [KO:K02042]
RAK1035_0258  [KO:K02042]
RAK1035_0299  [KO:K07323]
RAK1035_0301  [KO:K12536]
RAK1035_0372  [KO:K01996]
RAK1035_0373  [KO:K01999]
RAK1035_0374  [KO:K01998]
RAK1035_0376  [KO:K01997]
RAK1035_0377  [KO:K01995]
RAK1035_0453  [KO:K02017] [EC:7.3.2.5]
RAK1035_0454  [KO:K02018]
RAK1035_0455  [KO:K02020]
RAK1035_0461  [KO:K17321]
RAK1035_0463  [KO:K17323]
RAK1035_0464  [KO:K17322]
RAK1035_0465  [KO:K17325]
RAK1035_0466  [KO:K17324]
RAK1035_0482  [KO:K02067]
RAK1035_0490  [KO:K11072] [EC:7.6.2.11]
RAK1035_0491  [KO:K11070]
RAK1035_0492  [KO:K11071]
RAK1035_0493  [KO:K11069]
RAK1035_0559  [KO:K11709]
RAK1035_0560  [KO:K11708]
RAK1035_0561  [KO:K11710] [EC:7.2.2.5]
RAK1035_0562  [KO:K11707]
RAK1035_0588  [KO:K11070]
RAK1035_0589  [KO:K11071]
RAK1035_0590  [KO:K11072] [EC:7.6.2.11]
RAK1035_0591  [KO:K11069]
RAK1035_0604  [KO:K11963]
RAK1035_0605  [KO:K11962]
RAK1035_0606  [KO:K11961]
RAK1035_0607  [KO:K11960]
RAK1035_0608  [KO:K11959]
RAK1035_0610  [KO:K11070]
RAK1035_0611  [KO:K11071]
RAK1035_0612  [KO:K11072] [EC:7.6.2.11]
RAK1035_0613  [KO:K11069]
RAK1035_0621  [KO:K15578] [EC:7.3.2.4]
RAK1035_0622  [KO:K15577]
RAK1035_0623  [KO:K15576]
RAK1035_0642  [KO:K23537]
RAK1035_0643  [KO:K23535]
RAK1035_0644  [KO:K23536]
RAK1035_0645  [KO:K07335]
RAK1035_0662  [KO:K09812]
RAK1035_0663  [KO:K09811]
RAK1035_0749  [KO:K12372]
RAK1035_0750  [KO:K12371]
RAK1035_0751  [KO:K12370]
RAK1035_0752  [KO:K12369]
RAK1035_0753  [KO:K12368]
RAK1035_0756  [KO:K02042]
RAK1035_0757  [KO:K02041] [EC:7.3.2.2]
RAK1035_0758  [KO:K02044]
RAK1035_0769  [KO:K05815]
RAK1035_0770  [KO:K05814]
RAK1035_0771  [KO:K05813]
RAK1035_0772  [KO:K05816] [EC:7.6.2.10]
RAK1035_0808  [KO:K15551]
RAK1035_0809  [KO:K10831] [EC:7.6.2.7]
RAK1035_0810  [KO:K15552]
RAK1035_0870  [KO:K09689] [EC:7.6.2.12]
RAK1035_0871  [KO:K10107]
RAK1035_0873  [KO:K09688]
RAK1035_0919  [KO:K06861] [EC:7.5.2.5]
RAK1035_0932  [KO:K05816] [EC:7.6.2.10]
RAK1035_0933  [KO:K05815]
RAK1035_0934  [KO:K05814]
RAK1035_0935  [KO:K05813]
RAK1035_0978  [KO:K05772]
RAK1035_0979  [KO:K06857] [EC:7.3.2.6]
RAK1035_0980  [KO:K05773]
RAK1035_0989  [KO:K07335]
RAK1035_0990  [KO:K23537]
RAK1035_0991  [KO:K23535]
RAK1035_0992  [KO:K23536]
RAK1035_1045  [KO:K10001]
RAK1035_1046  [KO:K10003]
RAK1035_1047  [KO:K10002]
RAK1035_1048  [KO:K10004] [EC:7.4.2.1]
RAK1035_1056  [KO:K01999]
RAK1035_1057  [KO:K01997]
RAK1035_1058  [KO:K01995 K01996 K01998]
RAK1035_1170  [KO:K11073]
RAK1035_1171  [KO:K11076] [EC:7.6.2.16]
RAK1035_1172  [KO:K11075]
RAK1035_1173  [KO:K11074]
RAK1035_1259  [KO:K11072] [EC:7.6.2.11]
RAK1035_1260  [KO:K11069]
RAK1035_1261  [KO:K11070]
RAK1035_1262  [KO:K11071]
RAK1035_1268  [KO:K15598]
RAK1035_1310  [KO:K02040]
RAK1035_1380  [KO:K01996]
RAK1035_1381  [KO:K01995]
RAK1035_1382  [KO:K01998]
RAK1035_1383  [KO:K01997]
RAK1035_1385  [KO:K01999]
RAK1035_1549  [KO:K02002]
RAK1035_1550  [KO:K02000] [EC:7.6.2.9]
RAK1035_1551  [KO:K02001]
RAK1035_1582  [KO:K05847] [EC:7.6.2.9]
RAK1035_1583  [KO:K05846]
RAK1035_1584  [KO:K05846]
RAK1035_1586  [KO:K05845]
RAK1035_1619  [KO:K15576]
RAK1035_1620  [KO:K15577]
RAK1035_1621  [KO:K15578] [EC:7.3.2.4]
RAK1035_1632  [KO:K11072] [EC:7.6.2.11]
RAK1035_1633  [KO:K11069]
RAK1035_1634  [KO:K11071]
RAK1035_1635  [KO:K11070]
RAK1035_1641  [KO:K11959]
RAK1035_1642  [KO:K11960]
RAK1035_1643  [KO:K11961]
RAK1035_1644  [KO:K11962]
RAK1035_1645  [KO:K11963]
RAK1035_1648  [KO:K01999]
RAK1035_1655  [KO:K13893]
RAK1035_1656  [KO:K13894]
RAK1035_1657  [KO:K13895]
RAK1035_1658  [KO:K13896]
RAK1035_1755  [KO:K09969]
RAK1035_1756  [KO:K09970]
RAK1035_1757  [KO:K09971]
RAK1035_1758  [KO:K09972] [EC:7.4.2.1]
RAK1035_1780  [KO:K10112] [EC:7.5.2.-]
RAK1035_1781  [KO:K10112] [EC:7.5.2.-]
RAK1035_1809  [KO:K12536]
RAK1035_1861  [KO:K02002]
RAK1035_1862  [KO:K02000] [EC:7.6.2.9]
RAK1035_1863  [KO:K02001]
RAK1035_2172  [KO:K16961]
RAK1035_2173  [KO:K16962]
RAK1035_2174  [KO:K16963]
RAK1035_2229  [KO:K02000] [EC:7.6.2.9]
RAK1035_2230  [KO:K02001]
RAK1035_2232  [KO:K02002]
RAK1035_2253  [KO:K09810] [EC:7.6.2.-]
RAK1035_2254  [KO:K09808]
RAK1035_2281  [KO:K19341]
RAK1035_2282  [KO:K19340]
RAK1035_2324  [KO:K07091]
RAK1035_2325  [KO:K11720]
RAK1035_2437  [KO:K02012]
RAK1035_2438  [KO:K09816]
RAK1035_2439  [KO:K09817] [EC:7.2.2.20]
RAK1035_2441  [KO:K09815]
RAK1035_2457  [KO:K11069]
RAK1035_2458  [KO:K11071]
RAK1035_2459  [KO:K11070]
RAK1035_2460  [KO:K11072] [EC:7.6.2.11]
RAK1035_2570  [KO:K01996]
RAK1035_2571  [KO:K01995]
RAK1035_2572  [KO:K01998]
RAK1035_2573  [KO:K01997]
RAK1035_2574  [KO:K01999]
RAK1035_2599  [KO:K09810] [EC:7.6.2.-]
RAK1035_2600  [KO:K09808]
RAK1035_2610  [KO:K23064]
RAK1035_2611  [KO:K23063]
RAK1035_2612  [KO:K23062]
RAK1035_2613  [KO:K23061]
RAK1035_2621  [KO:K18893]
RAK1035_2638  [KO:K01996]
RAK1035_2639  [KO:K01995]
RAK1035_2640  [KO:K01998]
RAK1035_2641  [KO:K01997]
RAK1035_2717  [KO:K15599]
RAK1035_2719  [KO:K15600]
RAK1035_2759  [KO:K01999]
RAK1035_2760  [KO:K01997]
RAK1035_2761  [KO:K01998]
RAK1035_2762  [KO:K01995]
RAK1035_2763  [KO:K01996]
RAK1035_2868  [KO:K01999]
RAK1035_2871  [KO:K01999]
RAK1035_2872  [KO:K01997]
RAK1035_2873  [KO:K01998]
RAK1035_2874  [KO:K01995]
RAK1035_2875  [KO:K01996]
RAK1035_2989  [KO:K02040]
RAK1035_2990  [KO:K02037]
RAK1035_2991  [KO:K02038]
RAK1035_2992  [KO:K02036] [EC:7.3.2.1]
RAK1035_3009  [KO:K02066]
RAK1035_3010  [KO:K02065]
RAK1035_3019  [KO:K03523]
RAK1035_3056  [KO:K02010] [EC:7.2.2.7]
RAK1035_3285  [KO:K01998]
RAK1035_3286  [KO:K01997]
RAK1035_3287  [KO:K01996]
RAK1035_3288  [KO:K01995]
RAK1035_3289  [KO:K01999]
RAK1035_3506  [KO:K01999]
RAK1035_3665  [KO:K02195]
RAK1035_3666  [KO:K02194]
RAK1035_3667  [KO:K02193] [EC:7.6.2.5]
RAK1035_3790  [KO:K12541]
RAK1035_4048  [KO:K02044]
RAK1035_4049  [KO:K02041] [EC:7.3.2.2]
RAK1035_4050  [KO:K02042]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

DBGET integrated database retrieval system