KEGG   PATHWAY: ruj00020
Entry
ruj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ruminococcus bovis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ruj00020  Citrate cycle (TCA cycle)
ruj00020

Module
ruj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ruj00020]
ruj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ruj00020]
ruj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ruj00020]
Other DBs
GO: 0006099
Organism
Ruminococcus bovis [GN:ruj]
Gene
E5Z56_05040  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
E5Z56_10655  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
E5Z56_08995  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
E5Z56_08990  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E5Z56_03870  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
E5Z56_03860  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
E5Z56_09960  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
E5Z56_04535  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ruj00010  Glycolysis / Gluconeogenesis
ruj00061  Fatty acid biosynthesis
ruj00071  Fatty acid degradation
ruj00190  Oxidative phosphorylation
ruj00220  Arginine biosynthesis
ruj00250  Alanine, aspartate and glutamate metabolism
ruj00280  Valine, leucine and isoleucine degradation
ruj00350  Tyrosine metabolism
ruj00470  D-Amino acid metabolism
ruj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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