KEGG   PATHWAY: sbh03030
Entry
sbh03030                    Pathway                                
Name
DNA replication - Streptomyces bingchenggensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sbh03030  DNA replication
sbh03030

Organism
Streptomyces bingchenggensis [GN:sbh]
Gene
SBI_00111  dnaE1; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
SBI_00869  [KO:K03469] [EC:3.1.26.4]
SBI_02412  dnaQ1; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
SBI_03042  danQ2; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
SBI_03307  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
SBI_03577  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
SBI_05127  dnaZX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
SBI_05351  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SBI_05355  ssb; single-stranded DNA-binding protein [KO:K03111]
SBI_05384  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
SBI_05862  holB1; DNA polymerase III subunit delta [KO:K02341] [EC:2.7.7.7]
SBI_07054  [KO:K03111]
SBI_07150  holB2; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
SBI_07357  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
SBI_07624  [KO:K22316] [EC:3.1.26.4 3.1.3.73]
SBI_07898  dnaE2; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
SBI_07981  [KO:K02335] [EC:2.7.7.7]
SBI_08161  dnaQ3; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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