KEGG   PATHWAY: sce04146
Entry
sce04146                    Pathway                                
Name
Peroxisome - Saccharomyces cerevisiae (budding yeast)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
sce04146  Peroxisome
sce04146

Other DBs
GO: 0005777
Organism
Saccharomyces cerevisiae (budding yeast) [GN:sce]
Gene
YAR035W  YAT1; carnitine O-acetyltransferase YAT1 [KO:K00624] [EC:2.3.1.7]
YDL065C  PEX19; Pex19p [KO:K13337]
YDL066W  IDP1; isocitrate dehydrogenase (NADP(+)) IDP1 [KO:K00031] [EC:1.1.1.42]
YDR142C  PEX7; Pex7p [KO:K13341]
YDR244W  PEX5; Pex5p [KO:K13342]
YDR256C  CTA1; catalase A [KO:K03781] [EC:1.11.1.6]
YDR265W  PEX10; ubiquitin-protein ligase peroxin 10 [KO:K13346]
YDR329C  PEX3; Pex3p [KO:K13336]
YDR347W  MRP1; mitochondrial 37S ribosomal protein MRP1 [KO:K04564] [EC:1.15.1.1]
YEL020C  PXP1; putative indolepyruvate decarboxylase family protein [KO:K12261] [EC:4.1.2.63]
YER015W  FAA2; medium-chain fatty acid-CoA ligase FAA2 [KO:K01897] [EC:6.2.1.3]
YER024W  YAT2; carnitine O-acetyltransferase YAT2 [KO:K00624] [EC:2.3.1.7]
YFL030W  AGX1; alanine--glyoxylate transaminase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
YGL067W  NPY1; NAD(+) diphosphatase [KO:K03426] [EC:3.6.1.22]
YGL153W  PEX14; Pex14p [KO:K13343]
YGL205W  POX1; acyl-CoA oxidase [KO:K00232] [EC:1.3.3.6]
YGR088W  CTT1; catalase T [KO:K03781] [EC:1.11.1.6]
YHR008C  SOD2; superoxide dismutase SOD2 [KO:K04564] [EC:1.15.1.1]
YIL009W  FAA3; long-chain fatty acid-CoA ligase FAA3 [KO:K01897] [EC:6.2.1.3]
YIL160C  POT1; acetyl-CoA C-acyltransferase [KO:K07513] [EC:2.3.1.16]
YJL210W  PEX2; ubiquitin-protein ligase peroxin 2 [KO:K06664]
YJR101W  RSM26; mitochondrial 37S ribosomal protein RSM26 [KO:K04564] [EC:1.15.1.1]
YJR104C  SOD1; superoxide dismutase SOD1 [KO:K04565] [EC:1.15.1.1]
YKL188C  PXA2; ATP-binding cassette long-chain fatty acid transporter PXA2 [KO:K15628] [EC:7.6.2.4]
YKL197C  PEX1; AAA family ATPase peroxin 1 [KO:K13338]
YLR174W  IDP2; isocitrate dehydrogenase (NADP(+)) IDP2 [KO:K00031] [EC:1.1.1.42]
YLR191W  PEX13; peroxin PEX13 [KO:K13344]
YLR251W  SYM1; ethanol metabolism protein [KO:K13348]
YLR284C  ECI1; dodecenoyl-CoA isomerase [KO:K13239] [EC:5.3.3.8]
YML042W  CAT2; carnitine O-acetyltransferase CAT2 [KO:K00624] [EC:2.3.1.7]
YMR026C  PEX12; ubiquitin-protein ligase peroxin 12 [KO:K13345]
YMR208W  ERG12; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
YMR246W  FAA4; long-chain fatty acid-CoA ligase FAA4 [KO:K01897] [EC:6.2.1.3]
YNL009W  IDP3; isocitrate dehydrogenase (NADP(+)) IDP3 [KO:K00031] [EC:1.1.1.42]
YNL202W  SPS19; 2,4-dienoyl-CoA reductase (NADPH) [KO:K13237] [EC:1.3.1.124]
YNL329C  PEX6; AAA family ATPase peroxin 6 [KO:K13339]
YOL147C  PEX11; Pex11p [KO:K13352]
YOR180C  DCI1; putative dodecenoyl-CoA isomerase DCI1 [KO:K22587] [EC:5.3.3.21]
YOR317W  FAA1; long-chain fatty acid-CoA ligase FAA1 [KO:K01897] [EC:6.2.1.3]
YPL147W  PXA1; ATP-binding cassette long-chain fatty acid transporter PXA1 [KO:K15628] [EC:7.6.2.4]
YPR128C  ANT1; Ant1p [KO:K13354]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
sce00071  Fatty acid degradation
sce00230  Purine metabolism
sce00564  Glycerophospholipid metabolism
sce00565  Ether lipid metabolism
sce00900  Terpenoid backbone biosynthesis
KO pathway
ko04146   

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