KEGG   PATHWAY: ko04146
Entry
ko04146                     Pathway                                
Name
Peroxisome
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
ko04146  Peroxisome
ko04146

Other DBs
GO: 0005777
Orthology
K00031  IDH1, IDH2, icd; isocitrate dehydrogenase [EC:1.1.1.42]
K00106  XDH; xanthine dehydrogenase/oxidase [EC:1.17.1.4 1.17.3.2]
K00232  E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase [EC:1.3.3.6]
K00272  DDO; D-aspartate oxidase [EC:1.4.3.1]
K00273  DAO, aao; D-amino-acid oxidase [EC:1.4.3.3]
K00306  PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7]
K00308  PAOX; N1-acetylpolyamine oxidase [EC:1.5.3.13]
K00477  PHYH; phytanoyl-CoA hydroxylase [EC:1.14.11.18]
K00624  E2.3.1.7; carnitine O-acetyltransferase [EC:2.3.1.7]
K00649  GNPAT; glyceronephosphate O-acyltransferase [EC:2.3.1.42]
K00659  BAAT; bile acid-CoA:amino acid N-acyltransferase [EC:2.3.1.65 3.1.2.27 3.1.2.2]
K00803  AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
K00830  AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
K00869  MVK, mvaK1; mevalonate kinase [EC:2.7.1.36]
K01578  MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
K01640  HMGCL, hmgL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
K01796  AMACR, mcr; alpha-methylacyl-CoA racemase [EC:5.1.99.4]
K01897  ACSL, fadD; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
K03426  NUDT12_13, nudC; NAD+ diphosphatase [EC:3.6.1.22]
K03781  katE, CAT, catB, srpA; catalase [EC:1.11.1.6]
K04564  SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
K04565  SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
K05675  ABCD1, ALD; ATP-binding cassette, subfamily D (ALD), member 1 [EC:7.6.2.4]
K05676  ABCD2, ALDL1; ATP-binding cassette, subfamily D (ALD), member 2 [EC:7.6.2.4]
K05677  ABCD3, PMP70; ATP-binding cassette, subfamily D (ALD), member 3 [EC:7.6.2.4]
K05678  ABCD4, PXMP1L; ATP-binding cassette, subfamily D (ALD), member 4 [EC:7.6.2.8]
K05940  CROT; carnitine O-octanoyltransferase [EC:2.3.1.137]
K06664  PEX2, PXMP3; peroxin-2
K07513  ACAA1; acetyl-CoA acyltransferase 1 [EC:2.3.1.16]
K07514  EHHADH; enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3,2-trans-enoyl-CoA isomerase [EC:4.2.1.17 1.1.1.35 5.3.3.8]
K07753  PECR; peroxisomal trans-2-enoyl-CoA reductase [EC:1.3.1.38]
K08726  EPHX2; soluble epoxide hydrolase / lipid-phosphate phosphatase [EC:3.3.2.10 3.1.3.76]
K08746  SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2 [EC:6.2.1.- 6.2.1.3]
K08764  SCP2, SCPX; sterol carrier protein 2 [EC:2.3.1.176]
K10214  ACOX2; 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase [EC:1.17.99.3]
K11147  DHRS4; dehydrogenase/reductase SDR family member 4 [EC:1.1.-.-]
K11187  PRDX5; peroxiredoxin 5 [EC:1.11.1.24]
K11517  HAO; (S)-2-hydroxy-acid oxidase [EC:1.1.3.15]
K11992  ACOT8, PTE; acyl-CoA thioesterase 8 [EC:3.1.2.27]
K12261  HACL1; 2-hydroxyacyl-CoA lyase [EC:4.1.2.63]
K12405  HSD17B4; (3R)-3-hydroxyacyl-CoA dehydrogenase / 3a,7a,12a-trihydroxy-5b-cholest-24-enoyl-CoA hydratase / enoyl-CoA hydratase 2 [EC:1.1.1.- 4.2.1.107 4.2.1.119]
K12663  ECH1; Delta3,5-Delta2,4-dienoyl-CoA isomerase [EC:5.3.3.21]
K13237  DECR2, SPS19; 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], peroxisomal [EC:1.3.1.124]
K13239  ECI2, PECI; Delta3-Delta2-enoyl-CoA isomerase [EC:5.3.3.8]
K13241  NOS2; nitric-oxide synthase, inducible [EC:1.14.13.39]
K13273  PMVK; phosphomevalonate kinase [EC:2.7.4.2]
K13279  PRDX1; peroxiredoxin 1 [EC:1.11.1.24]
K13299  GSTK1; glutathione S-transferase kappa 1 [EC:2.5.1.18]
K13335  PEX16; peroxin-16
K13336  PEX3; peroxin-3
K13337  PEX19; peroxin-19
K13338  PEX1; peroxin-1
K13339  PEX6, PXAAA1; peroxin-6
K13340  PEX26; peroxin-26
K13341  PEX7, PTS2R; peroxin-7
K13342  PEX5, PXR1; peroxin-5
K13343  PEX14; peroxin-14
K13344  PEX13; peroxin-13
K13345  PEX12, PAF3; peroxin-12
K13346  PEX10; peroxin-10
K13347  PXMP2, PMP22; peroxisomal membrane protein 2
K13348  MPV17; protein Mpv17
K13349  MPV17L; Mpv17-like protein
K13350  PXMP4, PMP24; peroxisomal membrane protein 4
K13351  PEX11A; peroxin-11A
K13352  PEX11B; peroxin-11B
K13353  PEX11C; peroxin-11C
K13354  SLC25A17, PMP34; solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
K13355  NUDT19; acyl-coenzyme A diphosphatase NUDT19, mitochondrial [EC:3.6.1.77]
K13356  FAR; alcohol-forming fatty acyl-CoA reductase [EC:1.2.1.84]
K15628  PXA; ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein [EC:7.6.2.4]
K17879  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [EC:3.6.1.77]
K22587  DCI1; Delta3,5-Delta2,4-dienoyl-CoA isomerase [EC:5.3.3.21]
K25819  ABCD1, PXA1; ATP-binding cassette, subfamily D (ALD), peroxisomal ABC transporter
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
ko00071  Fatty acid degradation
ko00120  Primary bile acid biosynthesis
ko00230  Purine metabolism
ko00564  Glycerophospholipid metabolism
ko00565  Ether lipid metabolism
ko00830  Retinol metabolism
ko00900  Terpenoid backbone biosynthesis
ko03320  PPAR signaling pathway

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