Staphylococcus condimenti: A4G25_12670
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Entry
A4G25_12670 CDS
T04648
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scv
Staphylococcus condimenti
Pathway
scv03030
DNA replication
scv03410
Base excision repair
scv03420
Nucleotide excision repair
scv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A4G25_12670 (ligA)
03410 Base excision repair
A4G25_12670 (ligA)
03420 Nucleotide excision repair
A4G25_12670 (ligA)
03430 Mismatch repair
A4G25_12670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scv03032
]
A4G25_12670 (ligA)
03400 DNA repair and recombination proteins [BR:
scv03400
]
A4G25_12670 (ligA)
Enzymes [BR:
scv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A4G25_12670 (ligA)
DNA replication proteins [BR:
scv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A4G25_12670 (ligA)
DNA repair and recombination proteins [BR:
scv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A4G25_12670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A4G25_12670 (ligA)
MMR (mismatch excision repair)
DNA ligase
A4G25_12670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A4G25_12670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
Zn_ribbon_NUD
PTCB-BRCT
HHH
DUF7575
Motif
Other DBs
NCBI-ProteinID:
AMY06736
UniProt:
A0AB37H5D4
LinkDB
All DBs
Position
2637560..2639566
Genome browser
AA seq
668 aa
AA seq
DB search
MAELATRVQELHHLLNKYSHEYYVQDNPSVPDSEYDKLLRELIDIENAHPEYKTEDSPTV
RVGGEAQATFNKVRHDTPMLSLGNAFNEEELRRFDARVREKAGKVEYMCELKIDGLAVSL
KYENGRFVQGLTRGDGTIGEDITANLRTIRAIPLRINKPLTFEVRGEAYMPKKSFEHLNQ
QKEEAGEQAFANPRNAAAGSLRQLDSKLAAKRRLSIFLYSVNDFTNFHAESQSEALDELD
ELGFKTNQNRKRVSDIDGVLEYIKYWTAHREELPYDIDGIVIKVNDLEEQEELGYTQKSP
RWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLIHEK
DIRIGDSVVIKKAGDIIPEVIRSLPDRRPEGTEPYHMPTHCPSCGHELVRLDGEVALRCI
NPKCPAQLVEGMIHFVSRQAMNIDGLGTKIIMQLYENEIIKDVGDLYYLTKDDLLPLERM
GEKKADNLLNAIEASKKNSLEHLLFGLGIRHLGVKASQVIAERFETMDRLFKVTEEELLE
IHDIGDKLATSLITYLNNKDIIALIEKLRRKNVNMTYEGIKTSEIQTDSEFNGKTVVLTG
KLHNMTRTEASKWLEAQGAKTTSSVTKNTDLVIAGEDAGSKLTKAEKLGTEVWSEDEFIQ
KQKEVENK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacttgcaacacgcgttcaagaattacatcatcttttgaataaatatagtcat
gaatattacgttcaagacaatccgtcagtaccagatagtgagtatgataaattactgcgt
gaattaattgatattgaaaatgcccatcctgaatataaaacagaagattcaccgacagtc
agagtaggtggagaagcacaagcgacttttaataaagtacgtcatgacacgccgatgtta
agtttaggtaatgcatttaatgaagaagaattacgacgctttgatgcacgtgtacgtgaa
aaagcaggcaaagttgagtatatgtgcgagttgaaaattgatggattagcagtttcatta
aaatatgaaaatggccgttttgttcaaggacttacacgtggtgacggtacaattggtgag
gatattacagccaatttacgtaccattcgtgcgatacctttacgcatcaataaaccgctg
acgtttgaagtgcgtggtgaagcatatatgccgaagaaatcttttgagcatttgaatcaa
caaaaagaagaagcaggagaacaagcttttgctaacccaagaaatgctgcagcaggttca
ctgcgtcagttagattccaaacttgctgctaaacgcagactcagtatctttttatatagt
gtcaatgactttacaaatttccatgctgaatctcaaagcgaagcattagatgaattggat
gaacttggttttaaaaccaatcaaaatcgtaaacgcgtttcagatattgatggtgtatta
gagtacatcaaatactggacagcacatcgggaagaattgccctatgatatagatggtatt
gtgataaaagttaatgacttggaagaacaagaagaacttggttatactcaaaaatctcca
agatgggcgattgcttataagttcccagctgaagaagtggtcacgaaattattagatatt
gaattaagcatcggcagaacgggtgttgttacaccaactgctgtattagagccggttcga
gttgcgggtacgaccgtttcgcgtgcttcgttgcataatgaagatttgattcatgaaaaa
gacatccgtatcggcgatagtgtagtgattaaaaaagcgggagacatcattccggaagta
attcgcagtcttccagatcgacgtcctgaaggcacagaaccatatcatatgccgacacac
tgtccaagctgcggacatgagttagttcgcttagatggtgaagtcgcgttacgttgtata
aatccgaaatgcccagctcagttagtagaaggcatgattcattttgtatccagacaagcg
atgaatattgacgggttaggtactaaaattattatgcagctttatgaaaatgaaattatt
aaagatgtcggcgacctttattacttaactaaagatgatttattaccgcttgaaagaatg
ggtgaaaagaaagcagataatctgcttaatgcaattgaagcttctaagaaaaattcactt
gagcatttattatttggattaggtatcagacaccttggtgtgaaagcgagccaagtgatt
gctgagcgctttgaaacaatggatagattgtttaaagtaactgaagaagaattattagaa
attcatgatatcggcgataaattagcaacttctcttattacttatttaaataataaagat
attatcgctttaattgaaaaacttcgcagaaaaaatgttaatatgacatatgaaggtata
aaaacttcagaaattcagactgattctgaatttaatggtaaaacagtcgtcttaactggc
aagttgcataacatgacacgaacagaagcttcaaaatggcttgaagcacaaggggctaaa
acaacaagcagtgtgacaaaaaatactgaccttgttatcgcaggtgaagatgccggttct
aagttgactaaagctgaaaaacttggaacagaagtctggtctgaagatgaatttattcaa
aaacaaaaagaagttgaaaataaataa
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