KEGG   PATHWAY: sfj00920
Entry
sfj00920                    Pathway                                
Name
Sulfur metabolism - Serratia ficaria
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
sfj00920  Sulfur metabolism
sfj00920

Module
sfj_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sfj00920]
sfj_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:sfj00920]
Other DBs
GO: 0006790
Organism
Serratia ficaria [GN:sfj]
Gene
SAMEA4384070_0473  cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
SAMEA4384070_0605  ssuD_1; Alkanesulfonate monooxygenase [KO:K17228] [EC:1.14.14.35]
SAMEA4384070_0828  fccB; Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain precursor [KO:K17218] [EC:1.8.5.4]
SAMEA4384070_0841  cysJ; Sulfite reductase [NADPH] flavoprotein alpha-component [KO:K00380] [EC:1.8.1.2]
SAMEA4384070_0842  cysI; Sulfite reductase [NADPH] hemoprotein beta-component [KO:K00381] [EC:1.8.1.2]
SAMEA4384070_0843  cysH; Phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
SAMEA4384070_0846  cysD; Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
SAMEA4384070_0847  cysN; Sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
SAMEA4384070_0848  cysC; Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
SAMEA4384070_1130  cysK_1; Cysteine synthase [KO:K01738] [EC:2.5.1.47]
SAMEA4384070_1481  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
SAMEA4384070_1774  ssuB_1; Aliphatic sulfonates import ATP-binding protein SsuB [KO:K15555] [EC:7.6.2.14]
SAMEA4384070_1775  ssuC_1; Putative aliphatic sulfonates transport permease protein ssuC [KO:K15554]
SAMEA4384070_1776  ssuD_2; Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
SAMEA4384070_1777  ssuA_1; Putative aliphatic sulfonates-binding protein precursor [KO:K15553]
SAMEA4384070_1778  ssuE; FMN reductase (NADPH) [KO:K00299] [EC:1.5.1.38]
SAMEA4384070_2024  ssuB_2; Aliphatic sulfonates import ATP-binding protein SsuB [KO:K15555] [EC:7.6.2.14]
SAMEA4384070_2025  ssuC_2; Putative aliphatic sulfonates transport permease protein ssuC [KO:K15554]
SAMEA4384070_2026  [KO:K15553]
SAMEA4384070_2027  ssuA_2; Putative aliphatic sulfonates-binding protein precursor [KO:K15553]
SAMEA4384070_2029  ssuD_3; Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
SAMEA4384070_2033  ssuA_3; Putative aliphatic sulfonates-binding protein precursor [KO:K15553]
SAMEA4384070_2545  ssuA_4; Putative aliphatic sulfonates-binding protein precursor [KO:K15553]
SAMEA4384070_3240  ssuD_4; Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
SAMEA4384070_3575  cysK_2; Cysteine synthase A [KO:K01738] [EC:2.5.1.47]
SAMEA4384070_3584  cysA_3; Sulfate/thiosulfate import ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
SAMEA4384070_3585  cysW_3; Sulfate transport system permease protein CysW [KO:K02047]
SAMEA4384070_3586  cysW_4; Sulfate transport system permease protein CysW [KO:K02046]
SAMEA4384070_3587  cysP; Thiosulfate-binding protein precursor [KO:K02048]
SAMEA4384070_4464  metA; Homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
SAMEA4384070_4526  tauD; Alpha-ketoglutarate-dependent taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
SAMEA4384070_4527  ssuC_4; Putative aliphatic sulfonates transport permease protein ssuC [KO:K15552]
SAMEA4384070_4528  cmpD_2; Bicarbonate transport ATP-binding protein CmpD [KO:K10831] [EC:7.6.2.7]
SAMEA4384070_4529  tauA; Sulfate starvation-induced protein 1 [KO:K15551]
SAMEA4384070_4595  glpE; Thiosulfate sulfurtransferase glpE [KO:K02439] [EC:2.8.1.1]
SAMEA4384070_4720  metB; Cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
SAMEA4384070_4740  sbp_2; Sulfate starvation-induced protein 2 [KO:K23163]
SAMEA4384070_4748  cysE; Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00511  Acrylic acid
C00580  Dimethyl sulfide
C00894  Propenoyl-CoA
C00979  O-Acetyl-L-serine
C01013  3-Hydroxypropanoate
C01118  O-Succinyl-L-homoserine
C01180  4-Methylthio-2-oxobutanoic acid
C01861  Trithionate
C02084  Tetrathionate
C03172  S-Methyl-L-methionine
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22315  (2R)-2-Hydroxy-4-(methylsulfanyl)butanoate
C22316  (2R)-4-(Dimethylsulfaniumyl)-2-hydroxybutanoate
C22834  Protein-trisulfide
C23001  3-Aminopropyl(dimethyl)sulfanium
C23002  3-Dimethylsulfoniopropionaldehyde
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
sfj00260  Glycine, serine and threonine metabolism
sfj00270  Cysteine and methionine metabolism
sfj00640  Propanoate metabolism
sfj00680  Methane metabolism
sfj00720  Other carbon fixation pathways
KO pathway
ko00920   

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