KEGG   PATHWAY: smw00920
Entry
smw00920                    Pathway                                
Name
Sulfur metabolism - Serratia marcescens WW4
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
smw00920  Sulfur metabolism
smw00920

Module
smw_M00021  Cysteine biosynthesis, serine => cysteine [PATH:smw00920]
smw_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:smw00920]
Other DBs
GO: 0006790
Organism
Serratia marcescens WW4 [GN:smw]
Gene
SMWW4_v1c03960  cysQ; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
SMWW4_v1c05210  [KO:K17228] [EC:1.14.14.35]
SMWW4_v1c07830  [KO:K17218] [EC:1.8.5.4]
SMWW4_v1c07920  cysJ; sulfite reductase, alpha subunit [KO:K00380] [EC:1.8.1.2]
SMWW4_v1c07930  cysI; sulfite reductase, beta subunit [KO:K00381] [EC:1.8.1.2]
SMWW4_v1c07940  cysH; 3'-phosphoadenosine 5'-phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
SMWW4_v1c07970  cysD; sulfate adenylyltransferase, subunit 2 [KO:K00957] [EC:2.7.7.4]
SMWW4_v1c07980  cysN; sulfate adenylyltransferase, subunit 1 [KO:K00956] [EC:2.7.7.4]
SMWW4_v1c07990  cysC; adenosine 5'-phosphosulfate kinase [KO:K00860] [EC:2.7.1.25]
SMWW4_v1c10480  [KO:K01738] [EC:2.5.1.47]
SMWW4_v1c14050  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
SMWW4_v1c17180  ssuB; alkanesulfonate transporter subunit [KO:K15555] [EC:7.6.2.14]
SMWW4_v1c17190  ssuC; putative alkanesulfonate transporter subunit [KO:K15554]
SMWW4_v1c17200  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
SMWW4_v1c17210  ssuA; putative aliphatic sulfonate binding protein [KO:K15553]
SMWW4_v1c17220  ssuE; NAD(P)H-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
SMWW4_v1c23930  [KO:K17218] [EC:1.8.5.4]
SMWW4_v1c24920  [KO:K15553]
SMWW4_v1c31940  [KO:K04091] [EC:1.14.14.5 1.14.14.34]
SMWW4_v1c33590  ttrA; tetrathionate reductase subunit A [KO:K08357]
SMWW4_v1c33600  ttrC; tetrathionate reductase subunit C [KO:K08359]
SMWW4_v1c33610  ttrB; tetrathionate reductase subunit B [KO:K08358]
SMWW4_v1c35580  cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit [KO:K01738] [EC:2.5.1.47]
SMWW4_v1c35650  cysA; sulfate/thiosulfate transporter subunit [KO:K02045] [EC:7.3.2.3]
SMWW4_v1c35660  cysW; sulfate/thiosulfate ABC transporter subunit [KO:K02047]
SMWW4_v1c35670  cysU; sulfate/thiosulfate ABC transporter permease [KO:K02046]
SMWW4_v1c35680  cysP; thiosulfate-binding protein [KO:K02048]
SMWW4_v1c44670  metA; homoserine O-transsuccinylase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
SMWW4_v1c45250  tauD; taurine dioxygenase, 2-oxoglutarate-dependent [KO:K03119] [EC:1.14.11.17]
SMWW4_v1c45260  tauC; taurine ABC transporter permease [KO:K15552]
SMWW4_v1c45270  tauB; taurine ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
SMWW4_v1c45280  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
SMWW4_v1c45900  glpE; thiosulfate:cyanide sulfurtransferase (rhodanese) [KO:K02439] [EC:2.8.1.1]
SMWW4_v1c47170  metB; cystathionine gamma-synthase, PLP-dependent [KO:K01739] [EC:2.5.1.48]
SMWW4_v1c47370  sbp; sulfate transporter subunit [KO:K23163]
SMWW4_v1c47460  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00511  Acrylic acid
C00580  Dimethyl sulfide
C00894  Propenoyl-CoA
C00979  O-Acetyl-L-serine
C01013  3-Hydroxypropanoate
C01118  O-Succinyl-L-homoserine
C01180  4-Methylthio-2-oxobutanoic acid
C01861  Trithionate
C02084  Tetrathionate
C03172  S-Methyl-L-methionine
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22315  (2R)-2-Hydroxy-4-(methylsulfanyl)butanoate
C22316  (2R)-4-(Dimethylsulfaniumyl)-2-hydroxybutanoate
C22834  Protein-trisulfide
C23001  3-Aminopropyl(dimethyl)sulfanium
C23002  3-Dimethylsulfoniopropionaldehyde
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
smw00260  Glycine, serine and threonine metabolism
smw00270  Cysteine and methionine metabolism
smw00640  Propanoate metabolism
smw00680  Methane metabolism
smw00720  Other carbon fixation pathways
KO pathway
ko00920   

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