KEGG   PATHWAY: ssyi00920
Entry
ssyi00920                   Pathway                                
Name
Sulfur metabolism - Saccharothrix syringae
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
ssyi00920  Sulfur metabolism
ssyi00920

Module
ssyi_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:ssyi00920]
Other DBs
GO: 0006790
Organism
Saccharothrix syringae [GN:ssyi]
Gene
EKG83_30220  glycine/betaine ABC transporter substrate-binding protein [KO:K15551]
EKG83_30215  ABC transporter permease [KO:K15552]
EKG83_30225  ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
EKG83_30230  taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
EKG83_45605  ABC transporter substrate-binding protein [KO:K15553]
EKG83_07180  ABC transporter substrate-binding protein [KO:K15553]
EKG83_01885  ABC transporter substrate-binding protein [KO:K15553]
EKG83_45615  ABC transporter permease [KO:K15554]
EKG83_07170  ABC transporter permease [KO:K15554]
EKG83_01890  ABC transporter permease [KO:K15554]
EKG83_45610  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
EKG83_01895  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
EKG83_07175  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
EKG83_30120  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
EKG83_30160  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
EKG83_45600  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
EKG83_30500  NADPH-dependent oxidoreductase [KO:K00299] [EC:1.5.1.38]
EKG83_33435  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
EKG83_04655  ssuE; FMN reductase (NADPH) [KO:K00299] [EC:1.5.1.38]
EKG83_01265  NADPH-dependent oxidoreductase [KO:K00299] [EC:1.5.1.38]
EKG83_07185  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
EKG83_17835  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
EKG83_07190  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
EKG83_17830  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
EKG83_28320  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
EKG83_17825  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
EKG83_14650  hypothetical protein [KO:K01082] [EC:3.1.3.7]
EKG83_17770  3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
EKG83_39135  bifunctional oligoribonuclease/PAP phosphatase NrnA [KO:K06881] [EC:3.1.3.7 3.1.13.3]
EKG83_07195  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
EKG83_07205  nitrite/sulfite reductase [KO:K00392] [EC:1.8.7.1]
EKG83_13275  NAD(P)/FAD-dependent oxidoreductase [KO:K17218] [EC:1.8.5.4]
EKG83_09960  DoxX family membrane protein [KO:K16937] [EC:1.8.5.2]
EKG83_21600  DoxX family membrane protein [KO:K16937] [EC:1.8.5.2]
EKG83_45130  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
EKG83_08530  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
EKG83_44500  PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]
EKG83_28255  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
EKG83_41840  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
EKG83_03700  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
EKG83_32360  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K01739] [EC:2.5.1.48]
EKG83_13255  selenium-binding protein [KO:K17285] [EC:1.8.3.4]
EKG83_10470  sfnG; dimethyl sulfone monooxygenase SfnG [KO:K17228] [EC:1.14.14.35]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
ssyi00260  Glycine, serine and threonine metabolism
ssyi00270  Cysteine and methionine metabolism
ssyi00680  Methane metabolism
ssyi00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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