KEGG   PATHWAY: stan00020
Entry
stan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Stanieria sp. NIES-3757
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
stan00020  Citrate cycle (TCA cycle)
stan00020

Module
stan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stan00020]
stan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stan00020]
Other DBs
GO: 0006099
Organism
Stanieria sp. NIES-3757 [GN:stan]
Gene
STA3757_37650  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
STA3757_05850  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
STA3757_32060  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
STA3757_23280  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
STA3757_26490  CoA-binding domain protein [KO:K01902] [EC:6.2.1.5]
STA3757_26500  ATP-grasp domain protein [KO:K01903] [EC:6.2.1.5]
STA3757_12310  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STA3757_29080  sdhB; succinate dehydrogenase/fumarate reductase, iron-sulfur binding [KO:K00240] [EC:1.3.5.1]
STA3757_47360  succinate dehydrogenase, cytochrome subunit [KO:K00241]
STA3757_02950  Malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
STA3757_25190  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
STA3757_45480  acoB; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
STA3757_34130  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
STA3757_05320  ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
stan00010  Glycolysis / Gluconeogenesis
stan00053  Ascorbate and aldarate metabolism
stan00061  Fatty acid biosynthesis
stan00071  Fatty acid degradation
stan00190  Oxidative phosphorylation
stan00220  Arginine biosynthesis
stan00250  Alanine, aspartate and glutamate metabolism
stan00280  Valine, leucine and isoleucine degradation
stan00350  Tyrosine metabolism
stan00470  D-Amino acid metabolism
stan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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