KEGG   PATHWAY: vti02010
Entry
vti02010                    Pathway                                
Name
ABC transporters - Vibrio tarriae
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
vti02010  ABC transporters
vti02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Vibrio tarriae [GN:vti]
Gene
CEQ48_00130  [KO:K13896]
CEQ48_00135  [KO:K13895]
CEQ48_00140  [KO:K13894]
CEQ48_00145  [KO:K13893]
CEQ48_00185  [KO:K02011]
CEQ48_00190  [KO:K02010] [EC:7.2.2.7]
CEQ48_00195  [KO:K02012]
CEQ48_02030  [KO:K10439]
CEQ48_02035  [KO:K10440]
CEQ48_02040  [KO:K10441] [EC:7.5.2.7]
CEQ48_02045  [KO:K06726] [EC:5.4.99.62]
CEQ48_02340  [KO:K10117]
CEQ48_02400  [KO:K18893]
CEQ48_02520  [KO:K02036] [EC:7.3.2.1]
CEQ48_02525  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CEQ48_02530  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
CEQ48_02535  [KO:K02040]
CEQ48_02865  potD; spermidine/putrescine ABC transporter substrate-binding protein [KO:K11069]
CEQ48_03045  [KO:K12541]
CEQ48_03345  [KO:K10823 K15583]
CEQ48_03485  [KO:K10111] [EC:7.5.2.-]
CEQ48_03490  [KO:K10108]
CEQ48_03500  malG; maltose transporter permease [KO:K10110]
CEQ48_04330  [KO:K02040]
CEQ48_04615  [KO:K10000] [EC:7.4.2.1]
CEQ48_04620  [KO:K09997]
CEQ48_04625  [KO:K09999]
CEQ48_04630  artM; arginine transporter permease subunit ArtM [KO:K09998]
CEQ48_04765  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
CEQ48_04770  [KO:K02018]
CEQ48_04775  [KO:K02017] [EC:7.3.2.5]
CEQ48_05475  [KO:K10440]
CEQ48_06315  [KO:K02064]
CEQ48_06320  thiP; thiamine/thiamine pyrophosphate ABC transporter permease ThiP [KO:K02063]
CEQ48_06325  thiQ; thiamine ABC transporter ATP-binding protein [KO:K02062] [EC:7.6.2.15]
CEQ48_06370  lptB; ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
CEQ48_06405  [KO:K02065]
CEQ48_06410  [KO:K02066]
CEQ48_06415  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
CEQ48_06420  [KO:K07323]
CEQ48_06425  [KO:K07122]
CEQ48_06515  lptF; LPS export ABC transporter permease LptF [KO:K07091]
CEQ48_06520  [KO:K11720]
CEQ48_08550  [KO:K09816]
CEQ48_08555  [KO:K09817] [EC:7.2.2.20]
CEQ48_08560  [KO:K09815]
CEQ48_08670  [KO:K02193] [EC:7.6.2.5]
CEQ48_08675  ccmB; heme exporter protein CcmB [KO:K02194]
CEQ48_08680  [KO:K02195]
CEQ48_08685  ccmD; heme exporter protein CcmD [KO:K02196]
CEQ48_09255  [KO:K23228]
CEQ48_09260  [KO:K23227]
CEQ48_09265  [KO:K10829] [EC:7.2.2.16]
CEQ48_09440  [KO:K13894]
CEQ48_09445  [KO:K13895]
CEQ48_09450  [KO:K13893]
CEQ48_09615  lolD; lipoprotein-releasing system ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
CEQ48_09620  [KO:K09808]
CEQ48_09635  [KO:K11085] [EC:7.5.2.6]
CEQ48_09705  [KO:K10025] [EC:7.4.2.1]
CEQ48_09710  [KO:K10022]
CEQ48_09715  [KO:K10024]
CEQ48_09720  [KO:K10023]
CEQ48_10640  [KO:K19230]
CEQ48_10645  [KO:K19229]
CEQ48_10650  [KO:K19228]
CEQ48_10655  [KO:K19227]
CEQ48_10660  [KO:K19226]
CEQ48_11250  [KO:K05816] [EC:7.6.2.10]
CEQ48_11255  [KO:K05815]
CEQ48_11260  [KO:K05814]
CEQ48_11265  [KO:K05813]
CEQ48_11385  [KO:K06857] [EC:7.3.2.6]
CEQ48_11390  [KO:K05773]
CEQ48_11395  [KO:K05772]
CEQ48_11715  [KO:K11072] [EC:7.6.2.11]
CEQ48_11720  [KO:K11071]
CEQ48_11725  [KO:K11070]
CEQ48_11730  potD; spermidine/putrescine ABC transporter substrate-binding protein PotD [KO:K11069]
CEQ48_11735  potD; spermidine/putrescine ABC transporter substrate-binding protein PotD [KO:K11069]
CEQ48_11940  [KO:K09969]
CEQ48_11945  [KO:K09970]
CEQ48_11950  [KO:K09971]
CEQ48_11955  [KO:K09972] [EC:7.4.2.1]
CEQ48_12100  [KO:K10541]
CEQ48_12105  [KO:K10542] [EC:7.5.2.11]
CEQ48_12110  [KO:K10540]
CEQ48_12555  [KO:K06074] [EC:7.6.2.8]
CEQ48_12560  [KO:K06073]
CEQ48_12865  [KO:K16013]
CEQ48_12870  [KO:K16012]
CEQ48_13280  [KO:K10823]
CEQ48_13285  oppD; oligopeptide ABC transporter ATP-binding protein OppD [KO:K15583]
CEQ48_13290  [KO:K15582]
CEQ48_13295  oppB; oligopeptide transporter permease [KO:K15581]
CEQ48_13300  [KO:K15580]
CEQ48_14380  metN; D-methionine ABC transporter, ATP-binding protein [KO:K02071]
CEQ48_14385  [KO:K02072]
CEQ48_14390  metQ; methionine ABC transporter substrate-binding protein MetQ [KO:K02073]
CEQ48_14860  [KO:K09815]
CEQ48_14865  znuC; zinc ABC transporter ATP-binding protein ZnuC [KO:K09817] [EC:7.2.2.20]
CEQ48_14870  [KO:K09816]
CEQ48_15220  pstB; phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
CEQ48_15225  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CEQ48_15245  [KO:K02040]
CEQ48_15355  [KO:K11069]
CEQ48_15810  [KO:K02010] [EC:7.2.2.7]
CEQ48_15815  [KO:K02011]
CEQ48_15820  [KO:K02012]
CEQ48_16165  [KO:K02045] [EC:7.3.2.3]
CEQ48_16170  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
CEQ48_16175  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
CEQ48_16180  [KO:K02048]
CEQ48_18690  [KO:K16963]
CEQ48_18695  [KO:K16962]
CEQ48_18700  [KO:K16961]
CEQ48_19450  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
CEQ48_19455  [KO:K09811]
CEQ48_19760  [KO:K10439]
CEQ48_19765  [KO:K10441] [EC:7.5.2.7]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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