KEGG   PATHWAY: zmr00020
Entry
zmr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Zymomonas mobilis subsp. mobilis NRRL B-12526
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
zmr00020  Citrate cycle (TCA cycle)
zmr00020

Module
zmr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:zmr00020]
zmr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:zmr00020]
Other DBs
GO: 0006099
Organism
Zymomonas mobilis subsp. mobilis NRRL B-12526 [GN:zmr]
Gene
A254_01232  aarA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
A254_00727  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A254_00726  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
A254_00761  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A254_00705  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
A254_01662  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
A254_00043  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
A254_01551  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
A254_01552  bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
A254_00763  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
zmr00010  Glycolysis / Gluconeogenesis
zmr00053  Ascorbate and aldarate metabolism
zmr00061  Fatty acid biosynthesis
zmr00071  Fatty acid degradation
zmr00190  Oxidative phosphorylation
zmr00220  Arginine biosynthesis
zmr00250  Alanine, aspartate and glutamate metabolism
zmr00280  Valine, leucine and isoleucine degradation
zmr00350  Tyrosine metabolism
zmr00470  D-Amino acid metabolism
zmr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system