09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:barb03030]
AOA66_1545 dnaG; DNA primase DnaG AOA66_1041 rnhB_1; Ribonuclease HII AOA66_1433 rnhB_2; Ribonuclease HII AOA66_0647 dpo1; DNA polymerase 1 AOA66_1297 pol_2; DNA polymerase AOA66_0088 polB; DNA polymerase II small subunit AOA66_1443 polC; DNA polymerase II large subunit AOA66_0193 Minichromosome maintenance protein MCM AOA66_0646 priS; DNA primase small subunit PriS AOA66_0113 priL; DNA primase large subunit PriL AOA66_0112 pcn; DNA polymerase sliding clamp AOA66_0185 rfcS; Replication factor C small subunit AOA66_0184 rfcL; Replication factor C large subunit AOA66_1365 fen; Flap endonuclease 1 AOA66_0283 lig_1; DNA ligase AOA66_0941 lig_2; DNA ligase
K02316 dnaG; DNA primase [EC:2.7.7.101] K03470 rnhB; ribonuclease HII [EC:3.1.26.4] K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] K02683 priS; DNA primase small subunit [EC:2.7.7.102] K18882 priL; DNA primase large subunit K04802 PCNA; proliferating cell nuclear antigen K04801 rfcS; replication factor C small subunit K04800 rfcL; replication factor C large subunit K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
03410 Base excision repair [PATH:barb03410]
AOA66_0567 nth; Endonuclease III AOA66_1342 G/T mismatches repair enzyme AOA66_0559 ADP-ribosylglycohydrolase AOA66_0112 pcn; DNA polymerase sliding clamp AOA66_1365 fen; Flap endonuclease 1 AOA66_0283 lig_1; DNA ligase AOA66_0941 lig_2; DNA ligase AOA66_1272 Uracil DNA glycosylase superfamily protein AOA66_1407 endonuclease IV AOA66_0211 ssDNA exonuclease RecJ AOA66_0592 DHH family protein
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K11687 ADPRHL2; poly(ADP-ribose) glycohydrolase ARH3 [EC:3.2.1.143] K04802 PCNA; proliferating cell nuclear antigen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
03420 Nucleotide excision repair [PATH:barb03420]
AOA66_1727 rpoH; DNA-directed RNA polymerase subunit H AOA66_1493 hypothetical protein AOA66_0271 excinuclease ABC subunit C AOA66_0112 pcn; DNA polymerase sliding clamp AOA66_0283 lig_1; DNA ligase AOA66_0941 lig_2; DNA ligase
K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] K04802 PCNA; proliferating cell nuclear antigen K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
03430 Mismatch repair [PATH:barb03430]
AOA66_0211 ssDNA exonuclease RecJ AOA66_0592 DHH family protein AOA66_0112 pcn; DNA polymerase sliding clamp AOA66_0283 lig_1; DNA ligase AOA66_0941 lig_2; DNA ligase
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K04802 PCNA; proliferating cell nuclear antigen K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
03440 Homologous recombination
03450 Non-homologous end-joining [PATH:barb03450]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:barb03000]
03021 Transcription machinery [BR:barb03021]
03019 Messenger RNA biogenesis [BR:barb03019]
03041 Spliceosome
03011 Ribosome [BR:barb03011]
03009 Ribosome biogenesis [BR:barb03009]
03016 Transfer RNA biogenesis [BR:barb03016]
03012 Translation factors [BR:barb03012]
03110 Chaperones and folding catalysts [BR:barb03110]
04131 Membrane trafficking [BR:barb04131]
04121 Ubiquitin system [BR:barb04121]
03051 Proteasome [BR:barb03051]
03032 DNA replication proteins [BR:barb03032]
AOA66_0112 pcn; DNA polymerase sliding clamp AOA66_1365 fen; Flap endonuclease 1 AOA66_0283 lig_1; DNA ligase AOA66_0941 lig_2; DNA ligase AOA66_0638 Ribosome biogenesis protein Nop10 AOA66_1207 truB_1; putative tRNA pseudouridine synthase B AOA66_1493 hypothetical protein AOA66_0271 excinuclease ABC subunit C AOA66_1545 dnaG; DNA primase DnaG AOA66_0086 cdc6; ORC1-type DNA replication protein AOA66_0358 cdc6-2; ORC1-type DNA replication protein 2 AOA66_0193 Minichromosome maintenance protein MCM AOA66_0646 priS; DNA primase small subunit PriS AOA66_0113 priL; DNA primase large subunit PriL AOA66_0192 GINS complex protein AOA66_0645 hypothetical protein AOA66_1041 rnhB_1; Ribonuclease HII AOA66_1433 rnhB_2; Ribonuclease HII AOA66_0647 dpo1; DNA polymerase 1 AOA66_1297 pol_2; DNA polymerase AOA66_1443 polC; DNA polymerase II large subunit AOA66_0088 polB; DNA polymerase II small subunit AOA66_0184 rfcL; Replication factor C large subunit AOA66_0185 rfcS; Replication factor C small subunit AOA66_0170 top6A; Type 2 DNA topoisomerase 6 subunit A AOA66_0171 top6B; Type 2 DNA topoisomerase 6 subunit B AOA66_0626 rgy; Reverse gyrase
K04802 PCNA; proliferating cell nuclear antigen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] K02316 dnaG; DNA primase [EC:2.7.7.101] K10725 cdc6A; archaeal cell division control protein 6 K10725 cdc6A; archaeal cell division control protein 6 K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] K02683 priS; DNA primase small subunit [EC:2.7.7.102] K18882 priL; DNA primase large subunit K09723 ginS; DNA replication factor GINS K09723 ginS; DNA replication factor GINS K03470 rnhB; ribonuclease HII [EC:3.1.26.4] K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] K04800 rfcL; replication factor C large subunit K04801 rfcS; replication factor C small subunit K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
03036 Chromosome and associated proteins [BR:barb03036]
03400 DNA repair and recombination proteins [BR:barb03400]
AOA66_0227 ogt; Methylated-DNA--protein-cysteine methyltransferase AOA66_0567 nth; Endonuclease III AOA66_1342 G/T mismatches repair enzyme AOA66_0112 pcn; DNA polymerase sliding clamp AOA66_1365 fen; Flap endonuclease 1 AOA66_0283 lig_1; DNA ligase AOA66_0941 lig_2; DNA ligase AOA66_1727 rpoH; DNA-directed RNA polymerase subunit H AOA66_1493 hypothetical protein AOA66_0271 excinuclease ABC subunit C AOA66_0546 nudF; ADP-ribose pyrophosphatase AOA66_1272 Uracil DNA glycosylase superfamily protein AOA66_1407 endonuclease IV AOA66_1471 nfi; Endonuclease V AOA66_0211 ssDNA exonuclease RecJ AOA66_0592 DHH family protein AOA66_0299 DNA double-strand break repair Rad50 ATPase AOA66_0302 hypothetical protein AOA66_0300 DNA double-strand break repair protein Mre11 AOA66_0543 DNA double-strand break repair protein Mre11 AOA66_0301 exonuclease subunit SbcD AOA66_1031 radA; DNA repair and recombination protein RadA AOA66_1620 putative ski2-type helicase AOA66_0197 putative ski2-type helicase AOA66_0456 ATP-dependent DNA ligase AOA66_0626 rgy; Reverse gyrase AOA66_1627 putative ski2-type helicase AOA66_0066 hypothetical protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K04802 PCNA; proliferating cell nuclear antigen K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03546 sbcC; DNA repair protein SbcC/Rad50 K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 K04483 radA; DNA repair protein RadA K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K22585 nreA; DNA repair protein NreA
03029 Mitochondrial biogenesis [BR:barb03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Candidatus Bathyarchaeota archaeon BA2 KEGG Orthology (KO) - Candidatus Bathyarchaeota archaeon BA2