 Eukaryotic type
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RNA polymerase II system
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 RNA polymerase II
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Basal transcription factors
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Mediator complex
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Coactivators
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SAGA/TFTC/STAGA complex
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BAF/PBAF complex
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 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
K11648 SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
K05692 ACTB_G1; actin beta/gamma 1
K11340 ACTL6A, INO80K; actin-like protein 6A
K11652 ACTL6B; actin-like protein 6B
K11653 ARID1; AT-rich interactive domain-containing protein 1
K11765 ARID2; AT-rich interactive domain-containing protein 2
K11757 PBRM1, PB1; protein polybromo-1
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SWI/SNF complex
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K11771 SWI1, ADR6; SWI/SNF chromatin-remodeling complex subunit SWI1
K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
K11648 SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
K11772 SWI3; SWI/SNF complex subunit SWI3
K11773 SNF6; SWI/SNF complex component SNF6
K11774 SNF11; SWI/SNF complex component SNF11
K11775 SNF12, SWP73; SWI/SNF complex component SWP73
K11776 SWP82; SWI/SNF complex component SWP82
K11767 ARP7, SWP61; actin-related protein 7
K11768 ARP9, SWP59; actin-related protein 9
K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit
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RSC complex
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K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2
K11758 RSC3_30; chromatin structure-remodeling complex subunit RSC3/30
K11759 RSC4; chromatin structure-remodeling complex subunit RSC4
K11760 RSC6; chromatin structure-remodeling complex subunit RSC6
K11761 NPL6, RSC7; chromatin structure-remodeling complex protein RSC7
K11762 RSC8, SWH3, SSR2; chromatin structure-remodeling complex subunit RSC8
K11763 RSC9; chromatin structure-remodeling complex subunit RSC9
K11764 LDB7, RSC14; chromatin structure-remodeling complex protein RSC14
K11766 RSC58; chromatin structure-remodeling complex subunit RSC58
K11767 ARP7, SWP61; actin-related protein 7
K11768 ARP9, SWP59; actin-related protein 9
K11769 HTL1; chromatin structure-remodeling complex protein HTL1
K11770 SFH1; chromatin structure-remodeling complex subunit SFH1
K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
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Others
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Other transcription-related factors
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Transcription elongation factors
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Transcription termination factor
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K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-]
K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
K14401 CPSF1, CFT1; cleavage and polyadenylation specificity factor subunit 1
K14403 CPSF3, YSH1; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
K14404 CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
K06100 SYMPK; symplekin
K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
K12619 XRN2, RAT1; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
K14845 RAI1, DOM3Z; RAT1-interacting protein
K15559 RTT103; regulator of Ty1 transposition protein 103
K13219 SFPQ, PSF; splicing factor, proline- and glutamine-rich
K15560 NRD1; protein NRD1
K13191 RBM16, SCAF8; RNA-binding protein 16
K13167 SCAF4, SFRS15; SR-related and CTD-associated factor 4
K15561 NAB3; nuclear polyadenylated RNA-binding protein 3
K10706 SETX, ALS4, SEN1; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
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PAF1 complex
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NELF complex
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Super elongation complex (SEC)
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Little elongation complex (LEC)
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Brd4/P-TEFb complex
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BUR kinase complex
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CTDK-I complex
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7SK RNP complex
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K15189 HEXIM1_2; protein HEXIM1/2
K15190 MEPCE, BCDIN3; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
K15191 LARP7; La-related protein 7
K15188 CCNT; cyclin T
K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
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DBIRD complex
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Others
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RNA polymerase III system
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RNA polymerase III
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Basal transcription factors
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Other transcription-related factors
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snRNA-activating protein complex (SNAPc)
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K15208 SNAPC1; snRNA-activating protein complex subunit 1
K15209 SNAPC2; snRNA-activating protein complex subunit 2
K15210 SNAPC3; snRNA-activating protein complex subunit 3
K09453 SNAPC4; snRNA-activating protein complex subunit 4
K15211 SNAPC5; snRNA-activating protein complex subunit 5
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Octamer transcription factors
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K09364 POU2F, OTF; POU domain transcription factor, class 2
K09367 POU5F; POU domain transcription factor, class 5
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Others
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K20828 ZNF143_76, STAF; zinc finger protein 143/76
K25817 MAF1; repressor of RNA polymerase III transcription MAF1
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RNA polymerase I system
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RNA polymerase I
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Basal transcription factors
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Other transcription-related factors
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UBF
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Transcription initiation factors
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Transcription elongation factors
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NoRC (nucleolar remodeling complex)
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K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
K15224 BAZ2A, TIP5; bromodomain adjacent to zinc finger domain protein 2A
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CTDK-I complex
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Transcription termination factors
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Others
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Prokaryotic type
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Bacterial type
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RNA polymerase
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Other transcription-related factors
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RNA polymerase-associated proteins
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K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
K02600 nusA; transcription termination/antitermination protein NusA
K03625 nusB; transcription antitermination protein NusB
K02601 nusG; transcription termination/antitermination protein NusG
K03599 sspA, mglA; stringent starvation protein A
K03600 sspB; stringent starvation protein B
K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
K17762 rsbS; rsbT antagonist protein RsbS
K17763 rsbR; rsbT co-antagonist protein RsbR
K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
K19707 rsbQ; sigma-B regulation protein RsbQ
K05518 rsbX; phosphoserine phosphatase RsbX [EC:3.1.3.3]
K04749 rsbV, rsfB; anti-sigma B/F factor antagonist
K04757 rsbW; serine/threonine-protein kinase RsbW (anti-sigma-B/F factor) [EC:2.7.11.1]
K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
K03597 rseA; sigma-E factor negative regulatory protein RseA
K03598 rseB; sigma-E factor negative regulatory protein RseB
K03803 rseC; sigma-E factor negative regulatory protein RseC
K29217 rseA; anti-sigma-E factor RseA
K29218 rshA; anti-sigma-H factor RshA
K29219 rskA; anti-sigma-K factor RskA
K29220 rslA; anti-sigma-L factor RslA
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Transcription elongation factors
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K06204 dksA; RNA polymerase-binding transcription factor
K03624 greA; transcription elongation factor GreA
K04760 greB; transcription elongation factor GreB
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Transcription termination factor
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K03628 rho; transcription termination factor Rho
K19000 rof; Rho-binding antiterminator
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Archaeal type
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Transcription Machinery