KEGG   PATHWAY: ecb04120
Entry
ecb04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Equus caballus (horse)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ecb04120  Ubiquitin mediated proteolysis
ecb04120

Other DBs
GO: 0016567
Organism
Equus caballus (horse) [GN:ecb]
Gene
100033924  UBC; ubiquitin C [KO:K04551]
100059289  UBC; polyubiquitin-C [KO:K08770]
100071005  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
100052644  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
100060792  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100071215  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
100057234  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
100053395  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
100052809  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
100067272  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
100058679  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
100062920  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
100056334  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
100062598  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
100064918  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
100630045  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X2 [KO:K06689] [EC:2.3.2.23]
100630481  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X3 [KO:K06689] [EC:2.3.2.23]
111771588  ubiquitin-conjugating enzyme E2 D2-like [KO:K06689] [EC:2.3.2.23]
100060214  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
100061057  ubiquitin-conjugating enzyme E2 E2 isoform X2 [KO:K20217] [EC:2.3.2.23]
100067766  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
100057575  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
100072717  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100056215  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
100071949  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X2 [KO:K10576] [EC:2.3.2.23]
100065385  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
100071009  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
100061534  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
100055027  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
100058286  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
100630004  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
100066866  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X4 [KO:K04553] [EC:2.3.2.23]
100064883  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
100051493  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
102150222  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
100058843  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
100050645  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
100062653  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
106782352  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
100068420  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
100051527  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
100055998  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
100069934  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X2 [KO:K10584] [EC:2.3.2.23]
100051082  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100069535  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
100070568  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
100050725  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
100059725  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
100067217  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
100063241  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
100064082  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
100069340  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
100055725  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
100067291  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
100056934  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
100054735  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X2 [KO:K10591] [EC:2.3.2.26]
100054395  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X7 [KO:K13305] [EC:2.3.2.26]
100060375  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X3 [KO:K10592] [EC:2.3.2.26]
100062126  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
100067089  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
100050955  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
100053167  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
100062999  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X5 [KO:K10615] [EC:2.3.2.26]
100062986  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
100057243  UBE4B; ubiquitin conjugation factor E4 B isoform X3 [KO:K10597] [EC:2.3.2.27]
100066999  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
100057423  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 isoform X1 [KO:K10598] [EC:5.2.1.8]
100059076  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
100052706  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
100052084  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
100071403  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
100061819  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
100147299  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
100057832  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
100057532  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X2 [KO:K04506] [EC:2.3.2.27]
100062744  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
100052296  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100061688  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
100061855  COP1; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
100057332  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
100061273  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
100068894  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
100060870  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
100147373  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
100052741  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
100068879  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X3 [KO:K16063] [EC:2.3.2.-]
100065141  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
100061365  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
100050962  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
100066209  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
100056971  AIRE; autoimmune regulator [KO:K10603]
100069818  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
100051990  BRCA1; breast cancer type 1 susceptibility protein isoform X4 [KO:K10605] [EC:2.3.2.27]
100065770  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
100049999  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
100066864  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
100057121  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X11 [KO:K10608] [EC:2.3.2.27]
100055581  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
100051217  CUL1; cullin-1 [KO:K03347]
100062946  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
100069972  FBXW11; F-box/WD repeat-containing protein 11 isoform X3 [KO:K03362]
100070200  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
100053697  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
100062294  FBXW7; F-box/WD repeat-containing protein 7 [KO:K10260]
100051196  FBXO2; F-box only protein 2 isoform X2 [KO:K10099]
100065773  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
100054982  CUL2; cullin-2 [KO:K03870]
100060902  ELOC; elongin-C [KO:K03872]
106781563  ELOB; elongin-B isoform X1 [KO:K03873]
100058139  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
100061420  CUL3; cullin-3 isoform X1 [KO:K03869]
100055128  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
100053772  KLHL13; kelch-like protein 13 isoform X2 [KO:K10447]
100064784  KLHL9; kelch-like protein 9 [KO:K10447]
100057764  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X3 [KO:K07868]
100062805  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X3 [KO:K07868]
100033930  CUL4A; cullin-4A [KO:K10609]
100033938  CUL4B; cullin-4B isoform X3 [KO:K10609]
100059606  DDB1; DNA damage-binding protein 1 [KO:K10610]
100051180  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
100051199  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
100053984  DET1; DET1 homolog isoform X1 [KO:K10571]
106781847  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
100061726  CUL5; cullin-5 [KO:K10612]
102148488  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
100050730  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
100067262  CUL7; cullin-7 [KO:K10613]
100055213  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
100055053  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
100059767  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
100053348  CDC20; cell division cycle protein 20 homolog [KO:K03363]
100061287  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
100051869  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
111767487  anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
111768045  anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
100054552  CDC27; cell division cycle protein 27 homolog isoform X6 [KO:K03350]
100067388  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
100058548  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
100069285  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
100058376  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
100072599  CDC23; cell division cycle protein 23 homolog [KO:K03355]
100062837  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
100053266  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
100053101  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
100066106  ANAPC15; anaphase-promoting complex subunit 15 isoform X2 [KO:K25228]
100072806  ANAPC16; anaphase-promoting complex subunit 16 isoform X2 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ecb03050  Proteasome
KO pathway
ko04120   
LinkDB

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