KEGG   PATHWAY: aang03030
Entry
aang03030                   Pathway                                
Name
DNA replication - Anguilla anguilla (European eel)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
aang03030  DNA replication
aang03030

Organism
Anguilla anguilla (European eel) [GN:aang]
Gene
118206269  pold2; DNA polymerase delta subunit 2 [KO:K02328]
118206468  rfc5; replication factor C subunit 5 [KO:K10756]
118207042  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
118207088  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
118208120  rpa2; replication protein A 32 kDa subunit [KO:K10739]
118210646  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
118211941  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
118212179  [KO:K04802]
118213662  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
118216520  pold1; DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
118216655  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
118217118  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
118217688  prim2; DNA primase large subunit [KO:K02685]
118221058  [KO:K02327] [EC:2.7.7.7]
118221413  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
118222322  pola2; DNA polymerase alpha subunit B [KO:K02321]
118222354  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
118224366  mcm7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
118224857  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
118225705  mcm3l; MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like [KO:K02541] [EC:5.6.2.3]
118226074  pola1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
118226266  rfc4; replication factor C subunit 4 [KO:K10755]
118226464  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
118227096  pold4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
118227788  rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
118229835  mcm3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
118230224  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
118230717  zgc:110269; probable flap endonuclease 1 homolog [KO:K04799] [EC:3.1.-.-]
118231365  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
118231906  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
118232878  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
118232993  mcm6l; MCM6 minichromosome maintenance deficient 6, like [KO:K02542] [EC:5.6.2.3]
118233560  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
118233640  rpa3; replication protein A 14 kDa subunit [KO:K10740]
118235031  pold3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
118235620  rfc2; replication factor C subunit 2 [KO:K10755]
118236033  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
118236553  rfc3; replication factor C subunit 3 [KO:K10756]
118237231  [KO:K04802]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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