KEGG   PATHWAY: alii03030
Entry
alii03030                   Pathway                                
Name
DNA replication - Aliiglaciecola sp. LCG003
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
alii03030  DNA replication
alii03030

Organism
Aliiglaciecola sp. LCG003 [GN:alii]
Gene
QR722_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
QR722_00065  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
QR722_01190  ssb; single-stranded DNA-binding protein [KO:K03111]
QR722_01690  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
QR722_03305  [KO:K02339] [EC:2.7.7.7]
QR722_07700  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
QR722_10075  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
QR722_10625  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
QR722_10825  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
QR722_10830  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
QR722_11635  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
QR722_12025  [KO:K02342] [EC:2.7.7.7]
QR722_14420  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
QR722_14425  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
QR722_15785  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
QR722_15980  [KO:K02342] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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