KEGG   PATHWAY: arp00020
Entry
arp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arthrospira platensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arp00020  Citrate cycle (TCA cycle)
arp00020

Module
arp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:arp00020]
arp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arp00020]
arp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arp00020]
Other DBs
GO: 0006099
Organism
Arthrospira platensis [GN:arp]
Gene
NIES39_E02870  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NIES39_C03550  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NIES39_D04230  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NIES39_C03380  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NIES39_D05570  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
NIES39_D05580  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
NIES39_H00850  putative succinate dehydrogenase flavoprotein [KO:K00239] [EC:1.3.5.1]
NIES39_O04570  putative succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
NIES39_Q02300  heterodisulfide reductase subunit B [KO:K00241]
NIES39_B01130  fumarate hydratase, fragment [KO:K01679] [EC:4.2.1.2]
NIES39_M01090  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NIES39_D04240  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NIES39_L03130  pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
NIES39_Q01040  pdhB; pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
NIES39_B00640  dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
NIES39_L04090  nifJ; pyruvate flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arp00010  Glycolysis / Gluconeogenesis
arp00053  Ascorbate and aldarate metabolism
arp00061  Fatty acid biosynthesis
arp00071  Fatty acid degradation
arp00190  Oxidative phosphorylation
arp00220  Arginine biosynthesis
arp00250  Alanine, aspartate and glutamate metabolism
arp00280  Valine, leucine and isoleucine degradation
arp00350  Tyrosine metabolism
arp00470  D-Amino acid metabolism
arp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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