KEGG   PATHWAY: ath00740
Entry
ath00740                    Pathway                                
Name
Riboflavin metabolism - Arabidopsis thaliana (thale cress)
Class
Metabolism; Metabolism of cofactors and vitamins
Pathway map
ath00740  Riboflavin metabolism
ath00740

Module
ath_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:ath00740]
Other DBs
GO: 0006771
Organism
Arabidopsis thaliana (thale cress) [GN:ath]
Gene
AT5G59750  RIBA3; monofunctional riboflavin biosynthesis protein RIBA 3 [KO:K14652] [EC:4.1.99.12 3.5.4.25]
AT2G22450  RIBA2; riboflavin biosynthesis protein [KO:K14652] [EC:4.1.99.12 3.5.4.25]
AT5G64300  GCH; GTP cyclohydrolase II [KO:K14652] [EC:4.1.99.12 3.5.4.25]
AT4G20960  PyrD; Cytidine/deoxycytidylate deaminase family protein [KO:K11752] [EC:3.5.4.26 1.1.1.193]
AT3G47390  PHS1; cytidine/deoxycytidylate deaminase family protein [KO:K11752] [EC:3.5.4.26 1.1.1.193]
AT4G11570  Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [KO:K22912] [EC:3.1.3.104]
AT1G79790  FHY1; Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [KO:K20860] [EC:3.1.3.102 3.1.3.104]
AT2G44050  COS1; 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [KO:K00794] [EC:2.5.1.78]
AT2G20690  lumazine-binding family protein [KO:K00793] [EC:2.5.1.9]
AT4G21470  FMN/FHY; riboflavin kinase/FMN hydrolase [KO:K20884] [EC:2.7.1.26 3.1.3.102]
AT3G17790  PAP17; purple acid phosphatase 17 [KO:K14379] [EC:3.1.3.2]
AT2G01890  PAP8; purple acid phosphatase 8 [KO:K14379] [EC:3.1.3.2]
AT1G14700  PAP3; purple acid phosphatase 3 [KO:K14379] [EC:3.1.3.2]
AT1G25230  Calcineurin-like metallo-phosphoesterase superfamily protein [KO:K14379] [EC:3.1.3.2]
AT2G01880  PAP7; purple acid phosphatase 7 [KO:K14379] [EC:3.1.3.2]
AT5G08340  Nucleotidylyl transferase superfamily protein [KO:K22949] [EC:2.7.7.2]
AT5G23330  Nucleotidylyl transferase superfamily protein [KO:K22949] [EC:2.7.7.2]
AT4G29680  Alkaline-phosphatase-like family protein [KO:K01513] [EC:3.1.4.1 3.6.1.9]
AT2G42070  NUDX23; nudix hydrolase homolog 23 [KO:K18453] [EC:3.6.1.13 3.6.1.18]
AT3G24030  hydroxyethylthiazole kinase family protein [KO:K00878] [EC:2.7.1.50]
Compound
C00016  FAD
C00044  GTP
C00061  FMN
C00199  D-Ribulose 5-phosphate
C00235  Dimethylallyl diphosphate
C00255  Riboflavin
C00474  Ribitol
C01007  Reduced riboflavin
C01268  5-Amino-6-(5'-phosphoribosylamino)uracil
C01304  2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
C01352  FADH2
C01390  Prenol
C01727  Lumichrome
C01847  Reduced FMN
C03114  Dimethylbenzimidazole
C04332  6,7-Dimethyl-8-(D-ribityl)lumazine
C04454  5-Amino-6-(5'-phospho-D-ribitylamino)uracil
C04732  5-Amino-6-(1-D-ribitylamino)uracil
C05995  7-Hydroxy-6-methyl-8-ribityllumazine
C15556  L-3,4-Dihydroxybutan-2-one 4-phosphate
C15563  2-Amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
C18910  2,5-Diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one
C21214  Dimethylallyl phosphate
C21215  Prenylated FMNH2
Reference
PMID:12136096
  Authors
Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS.
  Title
Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation.
  Journal
Nucleic Acids Res 30:3141-51 (2002)
DOI:10.1093/nar/30.14.3141
Reference
PMID:11856310
  Authors
Fischer M, Haase I, Feicht R, Richter G, Gerhardt S, Changeux JP, Huber R, Bacher A.
  Title
Biosynthesis of riboflavin: 6,7-dimethyl-8-ribityllumazine synthase of Schizosaccharomyces pombe.
  Journal
Eur J Biochem 269:519-26 (2002)
DOI:10.1046/j.0014-2956.2001.02674.x
Reference
PMID:12867427
  Authors
Haase I, Fischer M, Bacher A, Schramek N.
  Title
Temperature-dependent presteady state kinetics of lumazine synthase from the hyperthermophilic eubacterium Aquifex aeolicus.
  Journal
J Biol Chem 278:37909-15 (2003)
DOI:10.1074/jbc.M303090200
Reference
PMID:16042598
  Authors
Fischer M, Romisch W, Illarionov B, Eisenreich W, Bacher A.
  Title
Structures and reaction mechanisms of riboflavin synthases of eubacterial and archaeal origin.
  Journal
Biochem Soc Trans 33:780-4 (2005)
DOI:10.1042/BST0330780
Related
pathway
ath00030  Pentose phosphate pathway
ath00040  Pentose and glucuronate interconversions
ath00230  Purine metabolism
ath00860  Porphyrin metabolism
ath00900  Terpenoid backbone biosynthesis
KO pathway
ko00740   
LinkDB

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