KEGG   PATHWAY: ath00030
Entry
ath00030                    Pathway                                
Name
Pentose phosphate pathway - Arabidopsis thaliana (thale cress)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ath00030  Pentose phosphate pathway
ath00030

Module
ath_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ath00030]
ath_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ath00030]
ath_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ath00030]
ath_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ath00030]
Other DBs
GO: 0006098
Organism
Arabidopsis thaliana (thale cress) [GN:ath]
Gene
AT4G24620  PGI1; phosphoglucose isomerase 1 [KO:K01810] [EC:5.3.1.9]
AT5G42740  Sugar isomerase (SIS) family protein [KO:K01810] [EC:5.3.1.9]
AT3G27300  G6PD5; glucose-6-phosphate dehydrogenase 5 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AT5G13110  G6PD2; glucose-6-phosphate dehydrogenase 2 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AT1G09420  G6PD4; glucose-6-phosphate dehydrogenase 4 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AT5G35790  G6PD1; glucose-6-phosphate dehydrogenase 1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AT1G24280  G6PD3; glucose-6-phosphate dehydrogenase 3 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AT5G40760  G6PD6; glucose-6-phosphate dehydrogenase 6 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AT5G24410  PGL4; 6-phosphogluconolactonase 4 [KO:K01057] [EC:3.1.1.31]
AT5G24420  PGL5; 6-phosphogluconolactonase 5 [KO:K01057] [EC:3.1.1.31]
AT3G49360  PGL2; 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
AT1G13700  PGL1; 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
AT5G24400  EMB2024; NagB/RpiA/CoA transferase-like superfamily protein [KO:K01057] [EC:3.1.1.31]
AT1G64190  6-phosphogluconate dehydrogenase family protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AT5G41670  6-phosphogluconate dehydrogenase family protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AT3G02360  6-phosphogluconate dehydrogenase family protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AT1G63290  Aldolase-type TIM barrel family protein [KO:K01783] [EC:5.1.3.1]
AT5G61410  RPE; D-ribulose-5-phosphate-3-epimerase [KO:K01783] [EC:5.1.3.1]
AT3G01850  Aldolase-type TIM barrel family protein [KO:K01783] [EC:5.1.3.1]
AT3G60750  Transketolase [KO:K00615] [EC:2.2.1.1]
AT2G45290  Transketolase [KO:K00615] [EC:2.2.1.1]
AT5G13420  TRA2; Aldolase-type TIM barrel family protein [KO:K00616] [EC:2.2.1.2]
AT1G12230  Aldolase superfamily protein [KO:K00616] [EC:2.2.1.2]
AT1G71100  RSW10; Ribose 5-phosphate isomerase, type A protein [KO:K01807] [EC:5.3.1.6]
AT2G01290  RPI2; ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
AT3G04790  EMB3119; Ribose 5-phosphate isomerase, type A protein [KO:K01807] [EC:5.3.1.6]
AT5G44520  NagB/RpiA/CoA transferase-like superfamily protein [KO:K01807] [EC:5.3.1.6]
AT1G17160  pfkB-like carbohydrate kinase family protein [KO:K00852] [EC:2.7.1.15]
AT5G51820  PGM; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
AT1G23190  PGM3; Phosphoglucomutase/phosphomannomutase family protein [KO:K01835] [EC:5.4.2.2]
AT1G70730  PGM2; Phosphoglucomutase/phosphomannomutase family protein [KO:K01835] [EC:5.4.2.2]
AT2G44530  Phosphoribosyltransferase family protein [KO:K00948] [EC:2.7.6.1]
AT1G32380  PRS2; phosphoribosyl pyrophosphate (PRPP) synthase 2 [KO:K00948] [EC:2.7.6.1]
AT2G35390  Phosphoribosyltransferase family protein [KO:K00948] [EC:2.7.6.1]
AT2G24270  ALDH11A3; aldehyde dehydrogenase 11A3 [KO:K00131] [EC:1.2.1.9]
AT2G16790  P-loop containing nucleoside triphosphate hydrolases superfamily protein [KO:K00851] [EC:2.7.1.12]
AT4G26520  FBA7; Aldolase superfamily protein [KO:K01623] [EC:4.1.2.13]
AT2G36460  FBA6; Aldolase superfamily protein [KO:K01623] [EC:4.1.2.13]
AT3G52930  FBA8; Aldolase superfamily protein [KO:K01623] [EC:4.1.2.13]
AT2G01140  PDE345; Aldolase superfamily protein [KO:K01623] [EC:4.1.2.13]
AT4G38970  FBA2; fructose-bisphosphate aldolase 2 [KO:K01623] [EC:4.1.2.13]
AT4G26530  FBA5; Aldolase superfamily protein [KO:K01623] [EC:4.1.2.13]
AT5G03690  FBA4; Aldolase superfamily protein [KO:K01623] [EC:4.1.2.13]
AT2G21330  FBA1; fructose-bisphosphate aldolase 1 [KO:K01623] [EC:4.1.2.13]
AT1G43670  FBP; Inositol monophosphatase family protein [KO:K03841] [EC:3.1.3.11]
AT3G54050  HCEF1; high cyclic electron flow 1 [KO:K03841] [EC:3.1.3.11]
AT5G64380  Inositol monophosphatase family protein [KO:K03841] [EC:3.1.3.11]
AT4G32840  PFK6; phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
AT5G56630  PFK7; phosphofructokinase 7 [KO:K00850] [EC:2.7.1.11]
AT5G61580  PFK4; phosphofructokinase 4 [KO:K00850] [EC:2.7.1.11]
AT4G29220  PFK1; phosphofructokinase 1 [KO:K00850] [EC:2.7.1.11]
AT2G22480  PFK5; phosphofructokinase 5 [KO:K00850] [EC:2.7.1.11]
AT4G26270  PFK3; phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
AT5G47810  PFK2; phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
AT1G76550  Phosphofructokinase family protein [KO:K00895] [EC:2.7.1.90]
AT4G04040  MEE51; Phosphofructokinase family protein [KO:K00895] [EC:2.7.1.90]
AT1G12000  Phosphofructokinase family protein [KO:K00895] [EC:2.7.1.90]
AT1G20950  Phosphofructokinase family protein [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ath00010  Glycolysis / Gluconeogenesis
ath00040  Pentose and glucuronate interconversions
ath00052  Galactose metabolism
ath00230  Purine metabolism
ath00240  Pyrimidine metabolism
ath00340  Histidine metabolism
ath00630  Glyoxylate and dicarboxylate metabolism
ath00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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