KEGG   PATHWAY: ath00900
Entry
ath00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Arabidopsis thaliana (thale cress)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
ath00900  Terpenoid backbone biosynthesis
ath00900

Module
ath_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:ath00900]
ath_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:ath00900]
ath_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:ath00900]
Other DBs
GO: 0009240 0016091
Organism
Arabidopsis thaliana (thale cress) [GN:ath]
Gene
AT3G21500  DXPS1; 1-deoxy-D-xylulose 5-phosphate synthase 1 [KO:K01662] [EC:2.2.1.7]
AT4G15560  CLA1; Deoxyxylulose-5-phosphate synthase [KO:K01662] [EC:2.2.1.7]
AT5G11380  DXPS3; 1-deoxy-D-xylulose 5-phosphate synthase 3 [KO:K01662] [EC:2.2.1.7]
AT5G62790  DXR; 1-deoxy-D-xylulose 5-phosphate reductoisomerase [KO:K00099] [EC:1.1.1.267]
AT2G02500  ISPD; Nucleotide-diphospho-sugar transferases superfamily protein [KO:K00991] [EC:2.7.7.60]
AT2G26930  CDPMEK; 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase [KO:K00919] [EC:2.7.1.148]
AT1G63970  ISPF; isoprenoid F [KO:K01770] [EC:4.6.1.12]
AT5G60600  HDS; 4-hydroxy-3-methylbut-2-enyl diphosphate synthase [KO:K03526] [EC:1.17.7.1 1.17.7.3]
AT4G34350  HDR; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [KO:K03527] [EC:1.17.7.4]
AT5G48230  ACAT2; acetoacetyl-CoA thiolase 2 [KO:K00626] [EC:2.3.1.9]
AT5G47720  AACT1; Thiolase family protein [KO:K00626] [EC:2.3.1.9]
AT4G11820  HMGS; hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase [KO:K01641] [EC:2.3.3.10]
AT2G17370  HMG2; 3-hydroxy-3-methylglutaryl-CoA reductase 2 [KO:K00021] [EC:1.1.1.34]
AT1G76490  HMG1; hydroxy methylglutaryl CoA reductase 1 [KO:K00021] [EC:1.1.1.34]
AT5G27450  MK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
AT1G31910  GHMP kinase family protein [KO:K00938] [EC:2.7.4.2]
AT3G54250  GHMP kinase family protein [KO:K01597] [EC:4.1.1.33]
AT2G38700  MVD1; mevalonate diphosphate decarboxylase 1 [KO:K01597] [EC:4.1.1.33]
AT1G26640  Amino acid kinase family protein [KO:K06981] [EC:2.7.4.26]
AT3G02780  IPP2; isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 [KO:K01823] [EC:5.3.3.2]
AT5G16440  IPP1; isopentenyl diphosphate isomerase 1 [KO:K01823] [EC:5.3.3.2]
AT5G47770  FPS1; farnesyl diphosphate synthase 1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
AT4G17190  FPS2; farnesyl diphosphate synthase 2 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
AT2G34630  GPS1; geranyl diphosphate synthase 1 [KO:K14066] [EC:2.5.1.1]
AT4G38460  GGR; geranylgeranyl reductase [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT1G49530  GGPS6; geranylgeranyl pyrophosphate synthase 6 [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT2G18620  Terpenoid synthases superfamily protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT2G18640  GGPS4; geranylgeranyl pyrophosphate synthase 4 [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT2G23800  GGPS2; geranylgeranyl pyrophosphate synthase 2 [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT3G14510  Polyprenyl synthetase family protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT3G14530  Terpenoid synthases superfamily protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT3G14550  GGPS3; geranylgeranyl pyrophosphate synthase 3 [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT3G20160  Terpenoid synthases superfamily protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT3G29430  Terpenoid synthases superfamily protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT3G32040  Terpenoid synthases superfamily protein [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT4G36810  GGPS1; geranylgeranyl pyrophosphate synthase 1 [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
AT1G78510  SPS1; solanesyl diphosphate synthase 1 [KO:K05356] [EC:2.5.1.84 2.5.1.85]
AT1G17050  SPS2; solanesyl diphosphate synthase 2 [KO:K05356] [EC:2.5.1.84 2.5.1.85]
AT5G58770  cPT4; Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT5G58780  cPT5; Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT5G58782  cPT6; Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT5G58784  Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT2G17570  cPT1; Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT5G60510  cPT9; Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT1G11755  LEW1; Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT5G60500  cPT8; Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT2G23400  Undecaprenyl pyrophosphate synthetase family protein [KO:K11778] [EC:2.5.1.87]
AT2G23410  CPT; cis-prenyltransferase [KO:K11778] [EC:2.5.1.87]
AT1G74470  Pyridine nucleotide-disulfide oxidoreductase family protein [KO:K10960] [EC:1.3.1.83 1.3.1.111]
AT3G59380  FTA; farnesyltransferase A [KO:K05955] [EC:2.5.1.58 2.5.1.59]
AT5G40280  ERA1; Prenyltransferase family protein [KO:K05954] [EC:2.5.1.58]
AT2G36305  FACE2; farnesylated protein-converting enzyme 2 [KO:K08658] [EC:3.4.26.1]
AT4G01320  ATSTE24; Peptidase family M48 family protein [KO:K06013] [EC:3.4.24.84]
AT5G23320  STE14A; S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
AT5G08335  ATSTE14B; Isoprenylcysteine carboxyl methyltransferase (ICMT) family [KO:K00587] [EC:2.1.1.100]
AT5G15860  PCME; prenylcysteine methylesterase [KO:K15889] [EC:3.1.1.-]
AT3G02410  ICME-LIKE2; alpha/beta-Hydrolases superfamily protein [KO:K15889] [EC:3.1.1.-]
AT1G26120  ICME-LIKE1; alpha/beta-Hydrolases superfamily protein [KO:K15889] [EC:3.1.1.-]
AT5G63910  FCLY; farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
AT4G33360  FLDH; NAD(P)-binding Rossmann-fold superfamily protein [KO:K15891] [EC:1.1.1.354]
AT5G58560  FOLK; Phosphatidate cytidylyltransferase family protein [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
ath00010  Glycolysis / Gluconeogenesis
ath00100  Steroid biosynthesis
ath00130  Ubiquinone and other terpenoid-quinone biosynthesis
ath00270  Cysteine and methionine metabolism
ath00510  N-Glycan biosynthesis
ath00902  Monoterpenoid biosynthesis
ath00904  Diterpenoid biosynthesis
ath00906  Carotenoid biosynthesis
ath00908  Zeatin biosynthesis
ath00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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