KEGG   PATHWAY: bbub03050
Entry
bbub03050                   Pathway                                
Name
Proteasome - Bubalus bubalis (water buffalo)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bbub03050  Proteasome
bbub03050

Other DBs
GO: 0000502
Organism
Bubalus bubalis (water buffalo) [GN:bbub]
Gene
102405679  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
102401028  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693]
102396817  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
102400000  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
102411122  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 isoform X1 [KO:K03037]
102390594  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
123465688  LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 7-like [KO:K03038]
102404364  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 isoform X3 [KO:K03039]
102396548  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 isoform X2 [KO:K03030]
102415305  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 isoform X1 [KO:K03031]
102390745  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 isoform X2 [KO:K03029]
102406698  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
102397267  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
102412438  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
102391163  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
102396902  PSMC1; 26S proteasome regulatory subunit 4 [KO:K03062]
102407673  PSMC5; 26S proteasome regulatory subunit 8 isoform X1 [KO:K03066]
102400517  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
102400430  PSMC3; 26S proteasome regulatory subunit 6A isoform X1 [KO:K03065]
102397070  PSME1; proteasome activator complex subunit 1 [KO:K06696]
102396767  PSME2; proteasome activator complex subunit 2 [KO:K06697]
102404744  PSME3; proteasome activator complex subunit 3 isoform X2 [KO:K06698]
102401464  proteasome activator complex subunit 3-like [KO:K06698]
102404471  PSME4; proteasome activator complex subunit 4 [KO:K06699]
102413718  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
102389577  proteasome subunit alpha type-6-like [KO:K02730] [EC:3.4.25.1]
102404693  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
102396933  proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
102394294  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
102414651  PSMA8; proteasome subunit alpha-type 8 isoform X1 [KO:K02731] [EC:3.4.25.1]
102409916  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
102404589  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
102395089  PSMA1; proteasome subunit alpha type-1 isoform X2 [KO:K02725] [EC:3.4.25.1]
102390482  PSMA3; proteasome subunit alpha type-3 isoform X2 [KO:K02727] [EC:3.4.25.1]
102393397  LOW QUALITY PROTEIN: proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
102412591  proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
123464563  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
102401903  PSMB7; proteasome subunit beta type-7 isoform X1 [KO:K02739] [EC:3.4.25.1]
102412893  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
102407724  PSMB2; proteasome subunit beta type-2 isoform X1 [KO:K02734] [EC:3.4.25.1]
102405437  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
102395181  PSMB1; proteasome subunit beta type-1 isoform X1 [KO:K02732] [EC:3.4.25.1]
102395092  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
102392269  PSMB9; proteasome subunit beta type-9 isoform X1 [KO:K02741] [EC:3.4.25.1]
102392749  PSMB10; proteasome subunit beta type-10 isoform X2 [KO:K02733] [EC:3.4.25.1]
102391390  PSMB8; proteasome subunit beta type-8 isoform X1 [KO:K02740] [EC:3.4.25.1]
102405115  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
102416494  IFNG; interferon gamma precursor [KO:K04687]
102389059  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
102410394  proteasome maturation protein [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
bbub04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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