KEGG   PATHWAY: bsem00630
Entry
bsem00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia seminalis
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsem00630  Glyoxylate and dicarboxylate metabolism
bsem00630

Module
bsem_M00012  Glyoxylate cycle [PATH:bsem00630]
bsem_M00621  Glycine cleavage system [PATH:bsem00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia seminalis [GN:bsem]
Gene
WJ12_10275  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
WJ12_27935  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
WJ12_30880  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
WJ12_18680  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
WJ12_06460  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
WJ12_11085  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
WJ12_10295  malate synthase [KO:K01638] [EC:2.3.3.9]
WJ12_33965  malate synthase G [KO:K01638] [EC:2.3.3.9]
WJ12_25065  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WJ12_19650  excisionase [KO:K01647] [EC:2.3.3.1]
WJ12_25100  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WJ12_25045  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
WJ12_20260  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
WJ12_29310  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WJ12_13870  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WJ12_09540  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WJ12_18670  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WJ12_08975  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WJ12_18095  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WJ12_16205  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
WJ12_13865  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
WJ12_08970  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
WJ12_03275  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
WJ12_33945  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
WJ12_03270  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
WJ12_33950  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
WJ12_03265  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
WJ12_33955  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
WJ12_24895  catalase [KO:K03781] [EC:1.11.1.6]
WJ12_21395  catalase [KO:K03781] [EC:1.11.1.6]
WJ12_17670  catalase [KO:K03781] [EC:1.11.1.6]
WJ12_00105  catalase [KO:K03781] [EC:1.11.1.6]
WJ12_16965  katE; catalase [KO:K03781] [EC:1.11.1.6]
WJ12_14845  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
WJ12_19775  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
WJ12_08675  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
WJ12_05145  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
WJ12_08375  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
WJ12_29680  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
WJ12_05190  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
WJ12_30425  hydrolase [KO:K01091] [EC:3.1.3.18]
WJ12_02295  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
WJ12_15005  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
WJ12_10830  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
WJ12_10910  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
WJ12_30540  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
WJ12_03620  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
WJ12_31530  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
WJ12_00745  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
WJ12_00755  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
WJ12_06080  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WJ12_10760  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WJ12_07445  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WJ12_00750  glycine cleavage system protein H [KO:K02437]
WJ12_09410  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
WJ12_09415  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
WJ12_09660  glycerate kinase [KO:K00865] [EC:2.7.1.165]
WJ12_20675  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
WJ12_02925  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
WJ12_28820  cupin [KO:K01569] [EC:4.1.1.2]
WJ12_17200  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
WJ12_04770  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
WJ12_25345  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
WJ12_25350  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
WJ12_04775  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
WJ12_25355  formate dehydrogenase [KO:K00124]
WJ12_04780  formate dehydrogenase [KO:K00124]
WJ12_25360  formate dehydrogenase [KO:K00127]
WJ12_04785  formate dehydrogenase [KO:K00127]
WJ12_08395  esterase [KO:K01432] [EC:3.5.1.9]
WJ12_12945  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
WJ12_13970  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
WJ12_31465  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
WJ12_28080  formamidase [KO:K01455] [EC:3.5.1.49]
WJ12_10920  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bsem00010  Glycolysis / Gluconeogenesis
bsem00020  Citrate cycle (TCA cycle)
bsem00030  Pentose phosphate pathway
bsem00053  Ascorbate and aldarate metabolism
bsem00071  Fatty acid degradation
bsem00230  Purine metabolism
bsem00250  Alanine, aspartate and glutamate metabolism
bsem00260  Glycine, serine and threonine metabolism
bsem00620  Pyruvate metabolism
bsem00710  Carbon fixation in photosynthetic organisms
bsem00750  Vitamin B6 metabolism
bsem00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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