KEGG   PATHWAY: cabi00534
Entry
cabi00534                   Pathway                                
Name
Glycosaminoglycan biosynthesis - heparan sulfate / heparin - Chelonoidis abingdonii (Abingdon island giant tortoise)
Description
Heparan sulfate (HS) and heparin (Hep) are glycosaminoglycans with repeating disaccharide units that consist of alternating residues of alpha-D-glucosamine (GlcN) and uronic acid, the latter being either beta-D-glucuronic acid (GlcA) or alpha-L-iduronic acid (IdoA). In these sugar residues, sulfation modification may be performed at various positions. Structural studies show that Hep possesses a higher degree of sulfation than HS. The biosynthesis of HS/Hep occurs with the addition of the first GlcNAc residue by EXTL3 glycosyltransferase after completion of tetrasaccharide linkage region attached to serine residue of a core protein. The chain polymeraization is then catalyzed by EXT1 and EXT2 transferases. As the chain polymerizes, HS/Hep undergoes a series of modification reactions including N-deacetylation, N-sulfation, epimerization, and subsequently O-sulfation. As final products of biosynthesis, HS is present in the form of hepran sulfate proteoglycan (HSPG) whereas Hep exists as a sugar chain without a core protein. The proteoglycan families with HS, as well as CS (chondroitin sulfate), DS (dermatan sulfate), and KS (keratan sulfate), are composed of two main types depending on the subcellular locations: cell membrane and extracellular matrix [BR:00535]. HS/Hep has been shown to bind to a variety of molecules, such as growth factors, chemokines, morphogens, and extracellular matrix components [BR:00536].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
cabi00534  Glycosaminoglycan biosynthesis - heparan sulfate / heparin
cabi00534

Module
cabi_M00057  Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH:cabi00534]
cabi_M00059  Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:cabi00534]
Other DBs
GO: 0030210
Organism
Chelonoidis abingdonii (Abingdon island giant tortoise) [GN:cabi]
Gene
116814727  [KO:K02578] [EC:3.5.1.- 2.8.2.8]
116815733  GLCE; D-glucuronyl C5-epimerase [KO:K01793] [EC:5.1.3.17]
116815943  HS6ST1; heparan-sulfate 6-O-sulfotransferase 1 [KO:K02514] [EC:2.8.2.-]
116816760  HS3ST2; heparan sulfate glucosamine 3-O-sulfotransferase 2 [KO:K07808] [EC:2.8.2.29]
116818811  EXT1; exostosin-1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
116819588  HS6ST3; heparan-sulfate 6-O-sulfotransferase 3 [KO:K08103] [EC:2.8.2.-]
116819907  NDST1; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 isoform X1 [KO:K02576] [EC:3.5.1.- 2.8.2.8]
116820686  [KO:K01024] [EC:2.8.2.23]
116822507  HS6ST2; heparan-sulfate 6-O-sulfotransferase 2 [KO:K08102] [EC:2.8.2.-]
116823617  NDST2; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X1 [KO:K02577] [EC:3.5.1.- 2.8.2.8]
116824600  B3GALT6; beta-1,3-galactosyltransferase 6 [KO:K00734] [EC:2.4.1.134]
116825362  [KO:K02579] [EC:3.5.1.- 2.8.2.8]
116827516  XYLT2; xylosyltransferase 2 [KO:K00771] [EC:2.4.2.26]
116829316  HS3ST5; heparan sulfate glucosamine 3-O-sulfotransferase 5 [KO:K08104] [EC:2.8.2.23]
116830716  [KO:K01024] [EC:2.8.2.23]
116830766  EXT2; exostosin-2 isoform X1 [KO:K02367] [EC:2.4.1.224 2.4.1.225]
116830839  XYLT1; xylosyltransferase 1 [KO:K00771] [EC:2.4.2.26]
116830850  [KO:K02578] [EC:3.5.1.- 2.8.2.8]
116831110  EXTL3; exostosin-like 3 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
116832186  [KO:K07809] [EC:2.8.2.30]
116832281  [KO:K07809] [EC:2.8.2.30]
116833302  B4GALT7; beta-1,4-galactosyltransferase 7 [KO:K00733] [EC:2.4.1.133]
116835867  B3GAT3; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 [KO:K10158] [EC:2.4.1.135]
116837997  EXTL1; exostosin-like 1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
116838989  HS2ST1; heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
116839218  EXTL2; exostosin-like 2 [KO:K02369] [EC:2.4.1.223]
116839639  HS3ST1; heparan sulfate glucosamine 3-O-sulfotransferase 1 [KO:K01024] [EC:2.8.2.23]
Compound
C00033  Acetate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C02189  [Protein]-L-serine
G00154  
G00155  
G00156  
G00157  
G00162  
G00163  
G00164  
Reference
  Authors
Kim BT, Kitagawa H, Tamura J, Saito T, Kusche-Gullberg M, Lindahl U, Sugahara K
  Title
Human tumor suppressor EXT gene family members EXTL1 and EXTL3 encode alpha 1,4- N-acetylglucosaminyltransferases that likely are involved in heparan sulfate/ heparin biosynthesis.
  Journal
Proc Natl Acad Sci U S A 98:7176-81 (2001)
DOI:10.1073/pnas.131188498
Reference
  Authors
Kitagawa H, Shimakawa H, Sugahara K
  Title
The tumor suppressor EXT-like gene EXTL2 encodes an alpha1, 4-N-acetylhexosaminyltransferase that transfers N-acetylgalactosamine and N-acetylglucosamine to the common glycosaminoglycan-protein linkage region. The key enzyme for the chain initiation of heparan sulfate.
  Journal
J Biol Chem 274:13933-7 (1999)
DOI:10.1074/jbc.274.20.13933
Reference
PMID:9756849
  Authors
Lind T, Tufaro F, McCormick C, Lindahl U, Lidholt K
  Title
The putative tumor suppressors EXT1 and EXT2 are glycosyltransferases required for the biosynthesis of heparan sulfate.
  Journal
J Biol Chem 273:26265-8 (1998)
DOI:10.1074/jbc.273.41.26265
Reference
  Authors
Li JP, Gong F, El Darwish K, Jalkanen M, Lindahl U.
  Title
Characterization of the D-glucuronyl C5-epimerase involved in the biosynthesis of heparin and heparan sulfate.
  Journal
J Biol Chem 276:20069-77 (2001)
DOI:10.1074/jbc.M011783200
Reference
  Authors
Habuchi O
  Title
Diversity and functions of glycosaminoglycan sulfotransferases.
  Journal
Biochim Biophys Acta 1474:115-27 (2000)
DOI:10.1016/S0304-4165(00)00016-7
Reference
PMID:9151776
  Authors
Rosenberg RD, Shworak NW, Liu J, Schwartz JJ, Zhang L
  Title
Heparan sulfate proteoglycans of the cardiovascular system. Specific structures emerge but how is synthesis regulated?
  Journal
J Clin Invest 99:2062-70 (1997)
DOI:10.1172/JCI119377
Reference
PMID:9988768
  Authors
Liu J, Shworak NW, Sinay P, Schwartz JJ, Zhang L, Fritze LM, Rosenberg RD
  Title
Expression of heparan sulfate D-glucosaminyl 3-O-sulfotransferase isoforms reveals novel substrate specificities.
  Journal
J Biol Chem 274:5185-92 (1999)
DOI:10.1074/jbc.274.8.5185
Reference
  Authors
Shukla D, Liu J, Blaiklock P, Shworak NW, Bai X, Esko JD, Cohen GH, Eisenberg RJ, Rosenberg RD, Spear PG
  Title
A novel role for 3-O-sulfated heparan sulfate in herpes simplex virus 1 entry.
  Journal
Cell 99:13-22 (1999)
DOI:10.1016/S0092-8674(00)80058-6
Reference
  Authors
Moon AF, Edavettal SC, Krahn JM, Munoz EM, Negishi M, Linhardt RJ, Liu J, Pedersen LC
  Title
Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1.
  Journal
J Biol Chem 279:45185-93 (2004)
DOI:10.1074/jbc.M405013200
Reference
  Authors
Chen J, Liu J
  Title
Characterization of the structure of antithrombin-binding heparan sulfate generated by heparan sulfate 3-O-sulfotransferase 5.
  Journal
Biochim Biophys Acta 1725:190-200 (2005)
DOI:10.1016/j.bbagen.2005.06.012
Related
pathway
cabi00531  Glycosaminoglycan degradation
KO pathway
ko00534   

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