KEGG   PATHWAY: cby00020
Entry
cby00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium botulinum A2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cby00020  Citrate cycle (TCA cycle)
cby00020

Module
cby_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cby00020]
cby_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cby00020]
Other DBs
GO: 0006099
Organism
Clostridium botulinum A2 [GN:cby]
Gene
CLM_0496  HMGL-related enzyme [KO:K05942] [EC:2.3.3.3]
CLM_0497  aconitase/isopropylmalate dehydratase family protein [KO:K01681] [EC:4.2.1.3]
CLM_0498  dehydrogenase, isocitrate/isopropylmalate family [KO:K00030] [EC:1.1.1.41]
CLM_0819  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLM_1875  acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CLM_3889  putative 2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLM_3888  putative 2-oxoacid:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLM_3887  2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [KO:K00177] [EC:1.2.7.3]
CLM_3890  putative 2-oxoacid:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CLM_3909  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region [KO:K01677] [EC:4.2.1.2]
CLM_3908  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region [KO:K01678] [EC:4.2.1.2]
CLM_3746  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CLM_1874  acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CLM_3126  pyruvate ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CLM_1345  pyruvate ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cby00010  Glycolysis / Gluconeogenesis
cby00053  Ascorbate and aldarate metabolism
cby00061  Fatty acid biosynthesis
cby00071  Fatty acid degradation
cby00190  Oxidative phosphorylation
cby00220  Arginine biosynthesis
cby00250  Alanine, aspartate and glutamate metabolism
cby00280  Valine, leucine and isoleucine degradation
cby00350  Tyrosine metabolism
cby00470  D-Amino acid metabolism
cby00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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