KEGG   PATHWAY: cdrk00020
Entry
cdrk00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium drakei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdrk00020  Citrate cycle (TCA cycle)
cdrk00020

Module
cdrk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cdrk00020]
cdrk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdrk00020]
cdrk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdrk00020]
Other DBs
GO: 0006099
Organism
Clostridium drakei [GN:cdrk]
Gene
B9W14_01275  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
B9W14_20585  hydratase [KO:K01681] [EC:4.2.1.3]
B9W14_01280  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
B9W14_22275  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B9W14_23285  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B9W14_19660  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B9W14_07745  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B9W14_12125  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B9W14_23280  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B9W14_19655  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B9W14_07750  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B9W14_12120  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B9W14_23275  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
B9W14_19650  pyruvate ferredoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
B9W14_07755  oxidoreductase [KO:K00177] [EC:1.2.7.3]
B9W14_12115  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
B9W14_23290  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
B9W14_19665  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
B9W14_07740  oxidoreductase [KO:K00176] [EC:1.2.7.3]
B9W14_12130  2-oxoacid:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
B9W14_18775  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
B9W14_10620  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
B9W14_10610  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
B9W14_23395  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
B9W14_23390  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
B9W14_22180  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
B9W14_01175  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
B9W14_03415  hypothetical protein [KO:K00627] [EC:2.3.1.12]
B9W14_09020  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
B9W14_07010  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
B9W14_09025  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
B9W14_07015  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
B9W14_09010  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
B9W14_07000  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
B9W14_09015  ferredoxin [KO:K00171] [EC:1.2.7.1]
B9W14_07005  pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
B9W14_12075  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
B9W14_03835  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdrk00010  Glycolysis / Gluconeogenesis
cdrk00053  Ascorbate and aldarate metabolism
cdrk00061  Fatty acid biosynthesis
cdrk00071  Fatty acid degradation
cdrk00190  Oxidative phosphorylation
cdrk00220  Arginine biosynthesis
cdrk00250  Alanine, aspartate and glutamate metabolism
cdrk00280  Valine, leucine and isoleucine degradation
cdrk00350  Tyrosine metabolism
cdrk00470  D-Amino acid metabolism
cdrk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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