KEGG   PATHWAY: cjr00020
Entry
cjr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter jejuni RM1221
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cjr00020  Citrate cycle (TCA cycle)
cjr00020

Module
cjr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cjr00020]
cjr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cjr00020]
cjr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cjr00020]
Other DBs
GO: 0006099
Organism
Campylobacter jejuni RM1221 [GN:cjr]
Gene
CJE0442  [KO:K00116] [EC:1.1.5.4]
CJE0457  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CJE0458  frdA; fumarate reductase, flavoprotein subunit [KO:K00233]
CJE0459  frdB; fumarate reductase, iron-sulfur protein subunit [KO:K25995]
CJE0489  sdhB; succinate dehydrogenase, iron-sulfur protein subunit [KO:K00240] [EC:1.3.5.1]
CJE0490  sdhC; succinate dehydrogenase, C subunit [KO:K00241]
CJE0635  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
CJE0636  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CJE0637  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
CJE0638  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CJE0639  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CJE0640  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CJE0641  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CJE0642  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CJE0922  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CJE1010  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CJE1011  [KO:K01960] [EC:6.4.1.1]
CJE1181  accC-1; acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
CJE1556  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CJE1649  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CJE1851  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cjr00010  Glycolysis / Gluconeogenesis
cjr00061  Fatty acid biosynthesis
cjr00190  Oxidative phosphorylation
cjr00220  Arginine biosynthesis
cjr00250  Alanine, aspartate and glutamate metabolism
cjr00280  Valine, leucine and isoleucine degradation
cjr00350  Tyrosine metabolism
cjr00470  D-Amino acid metabolism
cjr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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