KEGG   PATHWAY: ckn00020
Entry
ckn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caldicellulosiruptor kronotskyensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ckn00020  Citrate cycle (TCA cycle)
ckn00020

Module
ckn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ckn00020]
Other DBs
GO: 0006099
Organism
Caldicellulosiruptor kronotskyensis [GN:ckn]
Gene
Calkro_0420  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Calkro_2113  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Calkro_2129  pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
Calkro_2108  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Calkro_1927  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Calkro_1598  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Calkro_1597  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Calkro_1596  Pyruvate/ketoisovalerate oxidoreductase, catalytic domain [KO:K00177] [EC:1.2.7.3]
Calkro_1599  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Calkro_2566  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Calkro_2137  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Calkro_2242  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Calkro_1928  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Calkro_1778  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Calkro_1007  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Calkro_1777  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Calkro_1780  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Calkro_1006  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Calkro_1779  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ckn00010  Glycolysis / Gluconeogenesis
ckn00053  Ascorbate and aldarate metabolism
ckn00061  Fatty acid biosynthesis
ckn00190  Oxidative phosphorylation
ckn00220  Arginine biosynthesis
ckn00250  Alanine, aspartate and glutamate metabolism
ckn00280  Valine, leucine and isoleucine degradation
ckn00350  Tyrosine metabolism
ckn00470  D-Amino acid metabolism
ckn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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