KEGG   PATHWAY: cll03430
Entry
cll03430                    Pathway                                
Name
Mismatch repair - Campylobacter lari subsp. concheus LMG 11760
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
cll03430  Mismatch repair
cll03430

Other DBs
GO: 0006298
Organism
Campylobacter lari subsp. concheus LMG 11760 [GN:cll]
Gene
CONCH_0002  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
CONCH_0011  recJ; single-stranded DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
CONCH_0476  dnaX; DNA polymerase III, gamma and tau subunits [KO:K02343] [EC:2.7.7.7]
CONCH_0680  holB; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
CONCH_0682  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
CONCH_0796  rep; ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
CONCH_0843  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
CONCH_0902  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
CONCH_0904  ssb; single-stranded DNA binding protein [KO:K03111]
CONCH_0981  dnaQ; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
CONCH_1010  [KO:K03657] [EC:5.6.2.4]
CONCH_1108  mutS2; DNA mismatch binding protein, MutS2 family [KO:K07456]
CONCH_1113  xseB; exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
CONCH_1223  [KO:K06223] [EC:2.1.1.72]
CONCH_1301  xseA; exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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