KEGG   PATHWAY: clq00020
Entry
clq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter lari CCUG 22395
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
clq00020  Citrate cycle (TCA cycle)
clq00020

Module
clq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:clq00020]
clq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:clq00020]
Other DBs
GO: 0006099
Organism
Campylobacter lari CCUG 22395 [GN:clq]
Gene
UPTC4110_0328  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
UPTC4110_0329  frdA; fumarate reductase, flavoprotein subunit [KO:K00233]
UPTC4110_0330  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995]
UPTC4110_0383  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
UPTC4110_0398  [KO:K00241]
UPTC4110_0420  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
UPTC4110_0483  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
UPTC4110_0596  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
UPTC4110_0833  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
UPTC4110_0834  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
UPTC4110_0835  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
UPTC4110_0836  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
UPTC4110_0837  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
UPTC4110_1183  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
UPTC4110_1184  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
clq00010  Glycolysis / Gluconeogenesis
clq00061  Fatty acid biosynthesis
clq00190  Oxidative phosphorylation
clq00220  Arginine biosynthesis
clq00250  Alanine, aspartate and glutamate metabolism
clq00280  Valine, leucine and isoleucine degradation
clq00350  Tyrosine metabolism
clq00470  D-Amino acid metabolism
clq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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