KEGG   PATHWAY: csab03030
Entry
csab03030                   Pathway                                
Name
DNA replication - Chlorocebus sabaeus (green monkey)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
csab03030  DNA replication
csab03030

Organism
Chlorocebus sabaeus (green monkey) [GN:csab]
Gene
103214264  RFC3; replication factor C subunit 3 [KO:K10756]
103214447  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
103216094  DNA2; DNA replication helicase/nuclease 2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
103216989  MCM6; minichromosome maintenance complex component 6 [KO:K02542] [EC:5.6.2.3]
103218460  POLD4; DNA polymerase delta 4, accessory subunit [KO:K03505]
103218985  POLE3; DNA polymerase epsilon 3, accessory subunit [KO:K02326] [EC:2.7.7.7]
103220011  POLE4; DNA polymerase epsilon 4, accessory subunit [KO:K03506] [EC:2.7.7.7]
103220915  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
103221368  MCM3; minichromosome maintenance complex component 3 [KO:K02541] [EC:5.6.2.3]
103223231  MCM5; minichromosome maintenance complex component 5 [KO:K02209] [EC:5.6.2.3]
103225275  RPA2; replication protein A2 [KO:K10739]
103226140  POLD2; DNA polymerase delta 2, accessory subunit [KO:K02328]
103226491  RPA3; replication protein A3 [KO:K10740]
103227037  SSBP1; single stranded DNA binding protein 1 [KO:K03111]
103227177  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
103228108  MCM2; minichromosome maintenance complex component 2 [KO:K02540] [EC:5.6.2.3]
103228941  POLE2; DNA polymerase epsilon 2, accessory subunit [KO:K02325] [EC:2.7.7.7]
103229871  POLA2; DNA polymerase alpha 2, accessory subunit [KO:K02321]
103231730  POLA1; DNA polymerase alpha 1, catalytic subunit [KO:K02320] [EC:2.7.7.7]
103232330  RPA4; replication protein A4 [KO:K10741]
103233993  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
103234213  FEN1; flap structure-specific endonuclease 1 [KO:K04799] [EC:3.1.-.-]
103234960  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
103235079  [KO:K02327] [EC:2.7.7.7]
103236759  MCM4; minichromosome maintenance complex component 4 [KO:K02212] [EC:5.6.2.3]
103238542  PRIM1; primase (DNA) subunit 1 [KO:K02684] [EC:2.7.7.102]
103239217  RFC5; replication factor C subunit 5 [KO:K10756]
103239455  POLE; DNA polymerase epsilon, catalytic subunit [KO:K02324] [EC:2.7.7.7]
103241873  RFC4; replication factor C subunit 4 [KO:K10755]
103242170  [KO:K04802]
103242545  RPA1; replication protein A1 [KO:K07466]
103243971  PRIM2; primase (DNA) subunit 2 [KO:K02685]
103246204  RFC1; replication factor C subunit 1 [KO:K10754]
103246617  RFC2; replication factor C subunit 2 [KO:K10755]
103246753  MCM7; minichromosome maintenance complex component 7 [KO:K02210] [EC:5.6.2.3]
103246929  PCNA; proliferating cell nuclear antigen [KO:K04802]
103248038  POLD3; DNA polymerase delta 3, accessory subunit [KO:K03504]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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