KEGG   PATHWAY: csr00030
Entry
csr00030                    Pathway                                
Name
Pentose phosphate pathway - Clostridium saccharoperbutylacetonicum
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csr00030  Pentose phosphate pathway
csr00030

Module
csr_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:csr00030]
csr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:csr00030]
csr_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde-3P [PATH:csr00030]
csr_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:csr00030]
csr_M00580  Pentose phosphate pathway, archaea, fructose-6P => ribose-5P [PATH:csr00030]
csr_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde-3P [PATH:csr00030]
Other DBs
GO: 0006098
Organism
Clostridium saccharoperbutylacetonicum [GN:csr]
Gene
Cspa_c01050  prs1; ribose-phosphate pyrophosphokinase Prs [KO:K00948] [EC:2.7.6.1]
Cspa_c04520  pgi; glucose-6-phosphate isomerase Pgi [KO:K01810] [EC:5.3.1.9]
Cspa_c06140  [KO:K01808] [EC:5.3.1.6]
Cspa_c06710  kdgK1; 2-dehydro-3-deoxygluconokinase KdgK [KO:K00874] [EC:2.7.1.45]
Cspa_c06720  kdgA1; KHG/KDPG aldolase KdgA [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Cspa_c10680  pgcA; phosphoglucomutase PgcA [KO:K01835] [EC:5.4.2.2]
Cspa_c10840  pfkA1; 6-phosphofructokinase 2 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Cspa_c12900  rpe; ribulose-phosphate 3-epimerase Rpe [KO:K01783] [EC:5.1.3.1]
Cspa_c14790  pgl1; 6-phosphogluconolactonase Pgl [KO:K07404] [EC:3.1.1.31]
Cspa_c16490  deoC1; deoxyribose-phosphate aldolase DeoC [KO:K01619] [EC:4.1.2.4]
Cspa_c23570  [KO:K00616] [EC:2.2.1.2]
Cspa_c23580  tkt1; transketolase Tkt [KO:K00615] [EC:2.2.1.1]
Cspa_c24160  fbp; fructose-1,6-bisphosphatase class 3 1 [KO:K04041] [EC:3.1.3.11]
Cspa_c24710  prs2; ribose-phosphate pyrophosphokinase Prs [KO:K00948] [EC:2.7.6.1]
Cspa_c28710  kdgK2; 2-dehydro-3-deoxygluconokinase KdgK [KO:K00874] [EC:2.7.1.45]
Cspa_c30010  rpiA1; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
Cspa_c31750  [KO:K00948] [EC:2.7.6.1]
Cspa_c32270  gapN; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase GapN [KO:K00131] [EC:1.2.1.9]
Cspa_c33140  fba1; fructose-bisphosphate aldolase Fba [KO:K01624] [EC:4.1.2.13]
Cspa_c33430  kdgA2; KHG/KDPG aldolase KdgA [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Cspa_c34030  rpiA2; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
Cspa_c39710  rbsK; ribokinase RbsK [KO:K00852] [EC:2.7.1.15]
Cspa_c39950  fba2; fructose-bisphosphate aldolase Fba [KO:K01624] [EC:4.1.2.13]
Cspa_c39960  iolJ; 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase IolJ [KO:K01624] [EC:4.1.2.13]
Cspa_c43440  [KO:K00616] [EC:2.2.1.2]
Cspa_c43450  [KO:K00615] [EC:2.2.1.1]
Cspa_c43460  [KO:K00615] [EC:2.2.1.1]
Cspa_c46720  tkt2; transketolase Tkt [KO:K00615] [EC:2.2.1.1]
Cspa_c46730  deoC2; deoxyribose-phosphate aldolase DeoC [KO:K01619] [EC:4.1.2.4]
Cspa_c46740  tal; putative transaldolase Tal [KO:K00616] [EC:2.2.1.2]
Cspa_c46810  deoB; phosphopentomutase DeoB [KO:K01839] [EC:5.4.2.7]
Cspa_c46850  tkt3; transketolase Tkt [KO:K00615] [EC:2.2.1.1]
Cspa_c46910  [KO:K00616] [EC:2.2.1.2]
Cspa_c48330  [KO:K00615] [EC:2.2.1.1]
Cspa_c48340  [KO:K00615] [EC:2.2.1.1]
Cspa_c49320  pgl2; 6-phosphogluconolactonase Pgl [KO:K07404] [EC:3.1.1.31]
Cspa_c49600  [KO:K08094] [EC:5.3.1.27]
Cspa_c49610  [KO:K08093] [EC:4.1.2.43]
Cspa_c50040  [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Cspa_c51240  pfp; pyrophosphate--fructose 6-phosphate 1-phosphotransferase Pfp [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Cspa_c55060  pfkA2; 6-phosphofructokinase PfkA [KO:K00850] [EC:2.7.1.11]
Cspa_c55240  tktB; transketolase subunit B [KO:K00615] [EC:2.2.1.1]
Cspa_c55250  tktA; transketolase subunit A [KO:K00615] [EC:2.2.1.1]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
csr00010  Glycolysis / Gluconeogenesis
csr00040  Pentose and glucuronate interconversions
csr00052  Galactose metabolism
csr00230  Purine metabolism
csr00240  Pyrimidine metabolism
csr00340  Histidine metabolism
csr00630  Glyoxylate and dicarboxylate metabolism
csr00750  Vitamin B6 metabolism
KO pathway
ko00030   

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