KEGG   PATHWAY: ecj03430
Entry
ecj03430                    Pathway                                
Name
Mismatch repair - Escherichia coli K-12 W3110
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ecj03430  Mismatch repair
ecj03430

Other DBs
GO: 0006298
Organism
Escherichia coli K-12 W3110 [GN:ecj]
Gene
JW0179  dnaE; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
JW0205  dnaQ; DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
JW0412  xseB; exonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
JW0459  dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits [KO:K02343] [EC:2.7.7.7]
JW0635  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
JW1085  holB; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
JW1831  holE; DNA polymerase III, theta subunit [KO:K02345] [EC:2.7.7.7]
JW1833  exoX; DNA exonuclease X [KO:K10857] [EC:3.1.11.-]
JW1993  sbcB; exonuclease I [KO:K01141] [EC:3.1.11.1]
JW2403  ligA; DNA ligase, NAD(+)-dependent [KO:K01972] [EC:6.5.1.2]
JW2493  xseA; exonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
JW2703  mutS; methyl-directed mismatch repair protein [KO:K03555]
JW2799  mutH; methyl-directed mismatch repair protein [KO:K03573]
JW2860  recJ; ssDNA exonuclease, 5' --> 3'-specific [KO:K07462] [EC:3.1.-.-]
JW3350  dam; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
JW3622  ligB; DNA ligase, NAD(+)-dependent [KO:K01972] [EC:6.5.1.2]
JW3678  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
JW3786  uvrD; DNA-dependent ATPase I and helicase II [KO:K03657] [EC:5.6.2.4]
JW4020  ssb; Single-stranded DNA-binding protein [KO:K03111]
JW4128  mutL; methyl-directed mismatch repair protein [KO:K03572]
JW4216  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
JW4334  holD; DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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