KEGG   PATHWAY: egi03070
Entry
egi03070                    Pathway                                
Name
Bacterial secretion system - Sinorhizobium garamanticum
Description
Gram-negative bacteria secrete a wide range of proteins whose functions include biogenesis of organelles, such as pilli and flagella, nutrient acquisition, virulence, and efflux of drugs and other toxins. Six distinct secretion systems have been shown to mediate protein export through the inner and outer membranes of Gram-negative bacteria. These pathways are highly conserved throughout the Gram-negative bacterial species. In Gram-positive bacteria, secreted proteins are commonly translocated across the single membrane by the Sec pathway or the two-arginine (Tat) pathway.
Class
Environmental Information Processing; Membrane transport
Pathway map
egi03070  Bacterial secretion system
egi03070

Other DBs
GO: 0030253 0015628 0030254 0030255 0046819 0033103 0044098 0043952 0043953
Organism
Sinorhizobium garamanticum [GN:egi]
Gene
PZN02_003603  tolC; outer membrane channel protein TolC [KO:K12340]
PZN02_004891  HlyD family type I secretion periplasmic adaptor subunit [KO:K11003]
PZN02_004890  peptidase domain-containing ABC transporter [KO:K11004]
PZN02_006073  EscF/YscF/HrpA family type III secretion system needle major subunit [KO:K03221]
PZN02_006064  sctJ; type III secretion inner membrane ring lipoprotein SctJ [KO:K03222]
PZN02_006083  sctR; type III secretion system export apparatus subunit SctR [KO:K03226]
PZN02_006082  sctS; type III secretion system export apparatus subunit SctS [KO:K03227]
PZN02_006081  sctT; type III secretion system export apparatus subunit SctT [KO:K03228]
PZN02_006080  EscU/YscU/HrcU family type III secretion system export apparatus switch protein [KO:K03229]
PZN02_006075  sctV; type III secretion system export apparatus subunit SctV [KO:K03230]
PZN02_006062  sctN; type III secretion system ATPase SctN [KO:K03224] [EC:7.4.2.8]
PZN02_006063  FliH/SctL family protein [KO:K03223]
PZN02_006072  hypothetical protein [KO:K02453]
PZN02_003577  secDF; protein translocase subunit SecDF [KO:K12257]
PZN02_000649  secD; protein translocase subunit SecD [KO:K12257]
PZN02_003777  secE; preprotein translocase subunit SecE [KO:K03073]
PZN02_003676  secG; preprotein translocase subunit SecG [KO:K03075]
PZN02_003743  secY; preprotein translocase subunit SecY [KO:K03076]
PZN02_003578  yajC; preprotein translocase subunit YajC [KO:K03210]
PZN02_000765  yidC; membrane protein insertase YidC [KO:K03217]
PZN02_001928  secA; preprotein translocase subunit SecA [KO:K03070] [EC:7.4.2.8]
PZN02_001369  ftsY; signal recognition particle-docking protein FtsY [KO:K03110]
PZN02_001244  secB; protein-export chaperone SecB [KO:K03071]
PZN02_001375  ffh; signal recognition particle protein [KO:K03106] [EC:3.6.5.4]
PZN02_003588  twin-arginine translocase TatA/TatE family subunit [KO:K03116]
PZN02_003587  tatB; Sec-independent protein translocase protein TatB [KO:K03117]
PZN02_003586  tatC; twin-arginine translocase subunit TatC [KO:K03118]
PZN02_006308  type IV secretion system lytic transglycosylase VirB1 [KO:K03194]
PZN02_006309  virB2; pilin major subunit VirB2 [KO:K03197]
PZN02_006310  type IV secretion system protein VirB3 [KO:K03198]
PZN02_006312  virB5; pilin minor subunit VirB5 [KO:K03200]
PZN02_006314  type IV secretion system lipoprotein VirB7 [KO:K03202]
PZN02_006316  TrbG/VirB9 family P-type conjugative transfer protein [KO:K03204]
PZN02_006313  type IV secretion system protein [KO:K03201]
PZN02_006315  type IV secretion system protein VirB8 [KO:K03203]
PZN02_006317  virB10; type IV secretion system protein VirB10 [KO:K03195]
PZN02_006311  VirB4 family type IV secretion/conjugal transfer ATPase [KO:K03199] [EC:7.4.2.8]
PZN02_006318  virB11; P-type DNA transfer ATPase VirB11 [KO:K03196] [EC:7.4.2.8]
PZN02_002000  conjugal transfer protein TraG [KO:K03205] [EC:7.4.2.8]
PZN02_006212  traG; Ti-type conjugative transfer system protein TraG [KO:K03205] [EC:7.4.2.8]
PZN02_006322  virD4; type IV secretion system ATPase VirD4 [KO:K03205] [EC:7.4.2.8]
Compound
C00002  ATP
Reference
PMID:11173102
  Authors
Kim JF.
  Title
Revisiting the chlamydial type III protein secretion system: clues to the origin of type III protein secretion.
  Journal
Trends Genet 17:65-9 (2001)
DOI:10.1016/S0168-9525(00)02175-2
Reference
PMID:11309112
  Authors
Plano GV, Day JB, Ferracci F.
  Title
Type III export: new uses for an old pathway.
  Journal
Mol Microbiol 40:284-93 (2001)
DOI:10.1046/j.1365-2958.2001.02354.x
Reference
PMID:11413015
  Authors
Gauthier A, Finlay BB.
  Title
Bacterial pathogenesis: the answer to virulence is in the pore.
  Journal
Curr Biol 11:R264-7 (2001)
DOI:10.1016/S0960-9822(01)00134-8
Reference
PMID:10047550
  Authors
Burns DL.
  Title
Biochemistry of type IV secretion.
  Journal
Curr Opin Microbiol 2:25-9 (1999)
DOI:10.1016/S1369-5274(99)80004-6
Reference
PMID:10920394
  Authors
Christie PJ, Vogel JP.
  Title
Bacterial type IV secretion: conjugation systems adapted to deliver effector molecules to host cells.
  Journal
Trends Microbiol 8:354-60 (2000)
DOI:10.1016/S0966-842X(00)01792-3
Reference
PMID:11309113
  Authors
Christie PJ.
  Title
Type IV secretion: intercellular transfer of macromolecules by systems ancestrally related to conjugation machines.
  Journal
Mol Microbiol 40:294-305 (2001)
DOI:10.1046/j.1365-2958.2001.02302.x
Reference
PMID:10481178
  Authors
Nunn D.
  Title
Bacterial type II protein export and pilus biogenesis: more than just homologies?
  Journal
Trends Cell Biol 9:402-8 (1999)
DOI:10.1016/S0962-8924(99)01634-7
Reference
PMID:11309111
  Authors
Sandkvist M.
  Title
Biology of type II secretion.
  Journal
Mol Microbiol 40:271-83 (2001)
DOI:10.1046/j.1365-2958.2001.02403.x
Reference
PMID:11349009
  Authors
Sandkvist M.
  Title
Type II secretion and pathogenesis.
  Journal
Infect Immun 69:3523-35 (2001)
DOI:10.1128/IAI.69.6.3523-3535.2001
Reference
PMID:15546664
  Authors
Delepelaire P
  Title
Type I secretion in gram-negative bacteria.
  Journal
Biochim Biophys Acta 1694:149-61 (2004)
DOI:10.1016/j.bbamcr.2004.05.001
Reference
PMID:18406342
  Authors
Hazes B, Frost L
  Title
Towards a systems biology approach to study type II/IV secretion systems.
  Journal
Biochim Biophys Acta 1778:1839-50 (2008)
DOI:10.1016/j.bbamem.2008.03.011
Reference
PMID:16448494
  Authors
Johnson TL, Abendroth J, Hol WG, Sandkvist M
  Title
Type II secretion: from structure to function.
  Journal
FEMS Microbiol Lett 255:175-86 (2006)
DOI:10.1111/j.1574-6968.2006.00102.x
Reference
PMID:15546665
  Authors
Filloux A
  Title
The underlying mechanisms of type II protein secretion.
  Journal
Biochim Biophys Acta 1694:163-79 (2004)
DOI:10.1016/j.bbamcr.2004.05.003
Reference
PMID:19396170
  Authors
Spreter T, Yip CK, Sanowar S, Andre I, Kimbrough TG, Vuckovic M, Pfuetzner RA, Deng W, Yu AC, Finlay BB, Baker D, Miller SI, Strynadka NC
  Title
A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.
  Journal
Nat Struct Mol Biol 16:468-76 (2009)
DOI:10.1038/nsmb.1603
Reference
PMID:15590783
  Authors
Ghosh P
  Title
Process of protein transport by the type III secretion system.
  Journal
Microbiol Mol Biol Rev 68:771-95 (2004)
DOI:10.1128/MMBR.68.4.771-795.2004
Reference
PMID:12360191
  Authors
Cornelis GR
  Title
The Yersinia Ysc-Yop 'type III' weaponry.
  Journal
Nat Rev Mol Cell Biol 3:742-52 (2002)
DOI:10.1038/nrm932
Reference
PMID:17215876
  Authors
Baron C
  Title
VirB8: a conserved type IV secretion system assembly factor and drug target.
  Journal
Biochem Cell Biol 84:890-9 (2006)
DOI:10.1139/o06-148
Reference
PMID:17943123
  Authors
Kwok T, Zabler D, Urman S, Rohde M, Hartig R, Wessler S, Misselwitz R, Berger J, Sewald N, Konig W, Backert S
  Title
Helicobacter exploits integrin for type IV secretion and kinase activation.
  Journal
Nature 449:862-6 (2007)
DOI:10.1038/nature06187
Reference
PMID:16092524
  Authors
Christie PJ, Cascales E
  Title
Structural and dynamic properties of bacterial type IV secretion systems (review).
  Journal
Mol Membr Biol 22:51-61 (2005)
DOI:10.1080/09687860500063316
Reference
PMID:15546668
  Authors
Christie PJ
  Title
Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems.
  Journal
Biochim Biophys Acta 1694:219-34 (2004)
DOI:10.1016/j.bbamcr.2004.02.013
Reference
PMID:15590781
  Authors
Henderson IR, Navarro-Garcia F, Desvaux M, Fernandez RC, Ala'Aldeen D
  Title
Type V protein secretion pathway: the autotransporter story.
  Journal
Microbiol Mol Biol Rev 68:692-744 (2004)
DOI:10.1128/MMBR.68.4.692-744.2004
Reference
PMID:9778731
  Authors
Henderson IR, Navarro-Garcia F, Nataro JP
  Title
The great escape: structure and function of the autotransporter proteins.
  Journal
Trends Microbiol 6:370-8 (1998)
DOI:10.1016/S0966-842X(98)01318-3
Reference
PMID:18524912
  Authors
Filloux A, Hachani A, Bleves S
  Title
The bacterial type VI secretion machine: yet another player for protein transport across membranes.
  Journal
Microbiology 154:1570-83 (2008)
DOI:10.1099/mic.0.2008/016840-0
Reference
PMID:19251641
  Authors
Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ
  Title
Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin.
  Journal
Proc Natl Acad Sci U S A 106:4154-9 (2009)
DOI:10.1073/pnas.0813360106
Reference
PMID:17603507
  Authors
Kulasekara HD, Miller SI
  Title
Threonine phosphorylation times bacterial secretion.
  Journal
Nat Cell Biol 9:734-6 (2007)
DOI:10.1038/ncb0707-734
Reference
PMID:18078384
  Authors
Driessen AJ, Nouwen N
  Title
Protein translocation across the bacterial cytoplasmic membrane.
  Journal
Annu Rev Biochem 77:643-67 (2008)
DOI:10.1146/annurev.biochem.77.061606.160747
Reference
PMID:14641032
  Authors
Pool MR
  Title
Getting to the membrane: how is co-translational protein targeting to the endoplasmic reticulum regulated?
  Journal
Biochem Soc Trans 31:1232-7 (2003)
DOI:10.1042/bst0311232
Reference
PMID:19299134
  Authors
Desvaux M, Hebraud M, Talon R, Henderson IR
  Title
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  Journal
Trends Microbiol 17:139-45 (2009)
DOI:10.1016/j.tim.2009.01.004
Reference
PMID:15063851
  Authors
Nakatogawa H, Murakami A, Ito K
  Title
Control of SecA and SecM translation by protein secretion.
  Journal
Curr Opin Microbiol 7:145-50 (2004)
DOI:10.1016/j.mib.2004.01.001
KO pathway
ko03070   
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