KEGG   PATHWAY: gaf00534
Entry
gaf00534                    Pathway                                
Name
Glycosaminoglycan biosynthesis - heparan sulfate / heparin - Gambusia affinis (western mosquitofish)
Description
Heparan sulfate (HS) and heparin (Hep) are glycosaminoglycans with repeating disaccharide units that consist of alternating residues of alpha-D-glucosamine (GlcN) and uronic acid, the latter being either beta-D-glucuronic acid (GlcA) or alpha-L-iduronic acid (IdoA). In these sugar residues, sulfation modification may be performed at various positions. Structural studies show that Hep possesses a higher degree of sulfation than HS. The biosynthesis of HS/Hep occurs with the addition of the first GlcNAc residue by EXTL3 glycosyltransferase after completion of tetrasaccharide linkage region attached to serine residue of a core protein. The chain polymeraization is then catalyzed by EXT1 and EXT2 transferases. As the chain polymerizes, HS/Hep undergoes a series of modification reactions including N-deacetylation, N-sulfation, epimerization, and subsequently O-sulfation. As final products of biosynthesis, HS is present in the form of hepran sulfate proteoglycan (HSPG) whereas Hep exists as a sugar chain without a core protein. The proteoglycan families with HS, as well as CS (chondroitin sulfate), DS (dermatan sulfate), and KS (keratan sulfate), are composed of two main types depending on the subcellular locations: cell membrane and extracellular matrix [BR:00535]. HS/Hep has been shown to bind to a variety of molecules, such as growth factors, chemokines, morphogens, and extracellular matrix components [BR:00536].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
gaf00534  Glycosaminoglycan biosynthesis - heparan sulfate / heparin
gaf00534

Module
gaf_M00057  Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH:gaf00534]
gaf_M00059  Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:gaf00534]
Other DBs
GO: 0030210
Organism
Gambusia affinis (western mosquitofish) [GN:gaf]
Gene
122821839  xylosyltransferase 1-like [KO:K00771] [EC:2.4.2.26]
122822326  xylt2; xylosyltransferase 2 [KO:K00771] [EC:2.4.2.26]
122829258  xylt1; xylosyltransferase 1 [KO:K00771] [EC:2.4.2.26]
122837413  b4galt7; beta-1,4-galactosyltransferase 7 isoform X1 [KO:K00733] [EC:2.4.1.133]
122833643  b3galt6; beta-1,3-galactosyltransferase 6 [KO:K00734] [EC:2.4.1.134]
122820549  b3gat3; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 [KO:K10158] [EC:2.4.1.135]
122840814  extl2; exostosin-like 2 [KO:K02369] [EC:2.4.1.223]
122825437  extl3; exostosin-like 3 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
122843906  ext1b; exostosin-1b [KO:K02366] [EC:2.4.1.224 2.4.1.225]
122844227  ext1c; exostosin-1c isoform X1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
122825094  exostosin-1 isoform X1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
122831600  exostosin-1b-like isoform X1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
122821865  ext2; exostosin-2 [KO:K02367] [EC:2.4.1.224 2.4.1.225]
122837601  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like [KO:K02576] [EC:3.5.1.- 2.8.2.8]
122842856  ndst2a; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 [KO:K02577] [EC:3.5.1.- 2.8.2.8]
122829902  ndst3; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1 [KO:K02579] [EC:3.5.1.- 2.8.2.8]
122841808  glceb; D-glucuronyl C5-epimerase B isoform X1 [KO:K01793] [EC:5.1.3.17]
122838172  hs2st1b; heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
122840564  hs2st1a; heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
122846626  hs6st1a; heparan-sulfate 6-O-sulfotransferase 1-A [KO:K02514] [EC:2.8.2.-]
122837004  hs6st2; heparan-sulfate 6-O-sulfotransferase 2 isoform X1 [KO:K08102] [EC:2.8.2.-]
122827427  heparan-sulfate 6-O-sulfotransferase 3-B-like [KO:K08103] [EC:2.8.2.-]
122839375  hs6st3b; heparan-sulfate 6-O-sulfotransferase 3-B [KO:K08103] [EC:2.8.2.-]
122836749  hs3st1; heparan sulfate glucosamine 3-O-sulfotransferase 1 [KO:K01024] [EC:2.8.2.23]
122842478  heparan sulfate glucosamine 3-O-sulfotransferase 1-like [KO:K01024] [EC:2.8.2.23]
122828496  hs3st1l2; heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2 [KO:K01024] [EC:2.8.2.23]
122823623  heparan sulfate glucosamine 3-O-sulfotransferase 2-like [KO:K07808] [EC:2.8.2.29]
122821503  hs3st2; heparan sulfate glucosamine 3-O-sulfotransferase 2 [KO:K07808] [EC:2.8.2.29]
122822042  hs3st3b1a; heparan sulfate glucosamine 3-O-sulfotransferase 3B1a [KO:K07809] [EC:2.8.2.30]
122823118  heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like [KO:K07809] [EC:2.8.2.30]
122823121  hs3st3b1b; heparan sulfate glucosamine 3-O-sulfotransferase 3B1b [KO:K07809] [EC:2.8.2.30]
122823163  hs3st3l; heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [KO:K07809] [EC:2.8.2.30]
122824840  heparan sulfate glucosamine 3-O-sulfotransferase 5 [KO:K08104] [EC:2.8.2.23]
Compound
C00033  Acetate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C02189  [Protein]-L-serine
G00154   
G00155   
G00156   
G00157   
G00162   
G00163   
G00164   
Reference
  Authors
Kim BT, Kitagawa H, Tamura J, Saito T, Kusche-Gullberg M, Lindahl U, Sugahara K
  Title
Human tumor suppressor EXT gene family members EXTL1 and EXTL3 encode alpha 1,4- N-acetylglucosaminyltransferases that likely are involved in heparan sulfate/ heparin biosynthesis.
  Journal
Proc Natl Acad Sci U S A 98:7176-81 (2001)
DOI:10.1073/pnas.131188498
Reference
  Authors
Kitagawa H, Shimakawa H, Sugahara K
  Title
The tumor suppressor EXT-like gene EXTL2 encodes an alpha1, 4-N-acetylhexosaminyltransferase that transfers N-acetylgalactosamine and N-acetylglucosamine to the common glycosaminoglycan-protein linkage region. The key enzyme for the chain initiation of heparan sulfate.
  Journal
J Biol Chem 274:13933-7 (1999)
DOI:10.1074/jbc.274.20.13933
Reference
PMID:9756849
  Authors
Lind T, Tufaro F, McCormick C, Lindahl U, Lidholt K
  Title
The putative tumor suppressors EXT1 and EXT2 are glycosyltransferases required for the biosynthesis of heparan sulfate.
  Journal
J Biol Chem 273:26265-8 (1998)
DOI:10.1074/jbc.273.41.26265
Reference
  Authors
Li JP, Gong F, El Darwish K, Jalkanen M, Lindahl U.
  Title
Characterization of the D-glucuronyl C5-epimerase involved in the biosynthesis of heparin and heparan sulfate.
  Journal
J Biol Chem 276:20069-77 (2001)
DOI:10.1074/jbc.M011783200
Reference
  Authors
Habuchi O
  Title
Diversity and functions of glycosaminoglycan sulfotransferases.
  Journal
Biochim Biophys Acta 1474:115-27 (2000)
DOI:10.1016/S0304-4165(00)00016-7
Reference
PMID:9151776
  Authors
Rosenberg RD, Shworak NW, Liu J, Schwartz JJ, Zhang L
  Title
Heparan sulfate proteoglycans of the cardiovascular system. Specific structures emerge but how is synthesis regulated?
  Journal
J Clin Invest 99:2062-70 (1997)
DOI:10.1172/JCI119377
Reference
PMID:9988768
  Authors
Liu J, Shworak NW, Sinay P, Schwartz JJ, Zhang L, Fritze LM, Rosenberg RD
  Title
Expression of heparan sulfate D-glucosaminyl 3-O-sulfotransferase isoforms reveals novel substrate specificities.
  Journal
J Biol Chem 274:5185-92 (1999)
DOI:10.1074/jbc.274.8.5185
Reference
  Authors
Shukla D, Liu J, Blaiklock P, Shworak NW, Bai X, Esko JD, Cohen GH, Eisenberg RJ, Rosenberg RD, Spear PG
  Title
A novel role for 3-O-sulfated heparan sulfate in herpes simplex virus 1 entry.
  Journal
Cell 99:13-22 (1999)
DOI:10.1016/S0092-8674(00)80058-6
Reference
  Authors
Moon AF, Edavettal SC, Krahn JM, Munoz EM, Negishi M, Linhardt RJ, Liu J, Pedersen LC
  Title
Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1.
  Journal
J Biol Chem 279:45185-93 (2004)
DOI:10.1074/jbc.M405013200
Reference
  Authors
Chen J, Liu J
  Title
Characterization of the structure of antithrombin-binding heparan sulfate generated by heparan sulfate 3-O-sulfotransferase 5.
  Journal
Biochim Biophys Acta 1725:190-200 (2005)
DOI:10.1016/j.bbagen.2005.06.012
Related
pathway
gaf00531  Glycosaminoglycan degradation
KO pathway
ko00534   
LinkDB

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