KEGG   PATHWAY: gdu00020
Entry
gdu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gloeocapsopsis dulcis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gdu00020  Citrate cycle (TCA cycle)
gdu00020

Module
gdu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gdu00020]
gdu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gdu00020]
Other DBs
GO: 0006099
Organism
Gloeocapsopsis dulcis [GN:gdu]
Gene
P0S91_14125  citrate synthase [KO:K01647] [EC:2.3.3.1]
P0S91_08715  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
P0S91_25240  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P0S91_03110  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P0S91_22160  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
P0S91_22165  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
P0S91_03765  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
P0S91_19260  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
P0S91_04430  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
P0S91_11135  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
P0S91_18235  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
P0S91_03770  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
P0S91_05825  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gdu00010  Glycolysis / Gluconeogenesis
gdu00053  Ascorbate and aldarate metabolism
gdu00061  Fatty acid biosynthesis
gdu00071  Fatty acid degradation
gdu00190  Oxidative phosphorylation
gdu00220  Arginine biosynthesis
gdu00250  Alanine, aspartate and glutamate metabolism
gdu00280  Valine, leucine and isoleucine degradation
gdu00350  Tyrosine metabolism
gdu00470  D-Amino acid metabolism
gdu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system