KEGG   PATHWAY: hel03430
Entry
hel03430                    Pathway                                
Name
Mismatch repair - Halomonas elongata
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
hel03430  Mismatch repair
hel03430

Other DBs
GO: 0006298
Organism
Halomonas elongata [GN:hel]
Gene
HELO_1002  dnaN; DNA polymerase 3 beta subunit [KO:K02338] [EC:2.7.7.7]
HELO_1082  xseB; exodeoxyribonuclease 7 small subunit [KO:K03602] [EC:3.1.11.6]
HELO_1198  ligB; DNA ligase (NAD) LigB [KO:K01972] [EC:6.5.1.2]
HELO_1265  ssb1; single-stranded DNA-binding protein [KO:K03111]
HELO_1355  holC; DNA polymerase 3 chi subunit [KO:K02339] [EC:2.7.7.7]
HELO_1621  xseA; exodeoxyribonuclease 7 large subunit [KO:K03601] [EC:3.1.11.6]
HELO_2004  holB; DNA polymerase 3 delta' subunit [KO:K02341] [EC:2.7.7.7]
HELO_2006  [KO:K03657] [EC:5.6.2.4]
HELO_2055  dnaX; DNA polymerase 3 tau subunit [KO:K02343] [EC:2.7.7.7]
HELO_2110  ssb2; single-stranded DNA-binding protein [KO:K03111]
HELO_2225  holA; DNA polymerase 3 delta subunit [KO:K02340] [EC:2.7.7.7]
HELO_2662  [KO:K06223] [EC:2.1.1.72]
HELO_2691  dnaQ; DNA polymerase 3 epsilon subunit [KO:K02342] [EC:2.7.7.7]
HELO_2740  [KO:K02342] [EC:2.7.7.7]
HELO_3366  mutL; DNA mismatch repair protein MutL [KO:K03572]
HELO_3441  [KO:K02342] [EC:2.7.7.7]
HELO_3545  [KO:K02342] [EC:2.7.7.7]
HELO_3719  ligA; DNA ligase (NAD) LigA [KO:K01972] [EC:6.5.1.2]
HELO_3747  mutS; DNA mismatch repair protein MutS [KO:K03555]
HELO_3789  dnaE; DNA polymerase 3 alpha subunit [KO:K02337] [EC:2.7.7.7]
HELO_3855  [KO:K07462] [EC:3.1.-.-]
HELO_3871  sbcB; exodeoxyribonuclease 1 [KO:K01141] [EC:3.1.11.1]
HELO_4037  [KO:K03111]
HELO_4426  uvrD; DNA-dependent helicase II [KO:K03657] [EC:5.6.2.4]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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