KEGG   PATHWAY: hpaa03430
Entry
hpaa03430                   Pathway                                
Name
Mismatch repair - Haemophilus parahaemolyticus
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
hpaa03430  Mismatch repair
hpaa03430

Other DBs
GO: 0006298
Organism
Haemophilus parahaemolyticus [GN:hpaa]
Gene
E5Q53_00860  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
E5Q53_01745  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
E5Q53_01775  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
E5Q53_01790  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
E5Q53_01890  [KO:K02343] [EC:2.7.7.7]
E5Q53_02900  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
E5Q53_03680  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
E5Q53_03790  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
E5Q53_04015  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
E5Q53_05760  mutS; DNA mismatch repair protein MutS [KO:K03555]
E5Q53_06310  [KO:K02341] [EC:2.7.7.7]
E5Q53_06745  [KO:K02344] [EC:2.7.7.7]
E5Q53_06750  [KO:K02339] [EC:2.7.7.7]
E5Q53_06825  [KO:K02341] [EC:2.7.7.7]
E5Q53_07000  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
E5Q53_07790  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
E5Q53_08270  [KO:K06223] [EC:2.1.1.72]
E5Q53_08470  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
E5Q53_09270  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
E5Q53_09670  [KO:K03111]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

DBGET integrated database retrieval system