KEGG   PATHWAY: lav03030
Entry
lav03030                    Pathway                                
Name
DNA replication - Loxodonta africana (African savanna elephant)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
lav03030  DNA replication
lav03030

Organism
Loxodonta africana (African savanna elephant) [GN:lav]
Gene
100662695  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
100660393  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
100655166  ribonuclease H1-like [KO:K03469] [EC:3.1.26.4]
100661458  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
100661828  PCNA; proliferating cell nuclear antigen [KO:K04802]
100677776  FEN1; LOW QUALITY PROTEIN: flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
100663865  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
100670916  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
100662328  POLA2; LOW QUALITY PROTEIN: DNA polymerase alpha subunit B [KO:K02321]
100674292  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
100664795  PRIM2; DNA primase large subunit [KO:K02685]
100656381  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
100657668  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
100667439  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
100674373  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
100655118  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
100673367  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
104845639  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
100671272  MCM2; DNA replication licensing factor MCM2 isoform X2 [KO:K02540] [EC:5.6.2.3]
100672480  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
100667013  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
100673228  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
100661316  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
100656457  MCM7; DNA replication licensing factor MCM7 isoform X2 [KO:K02210] [EC:5.6.2.3]
100656421  RPA2; replication protein A 32 kDa subunit [KO:K10739]
104846846  RPA4; LOW QUALITY PROTEIN: replication protein A 30 kDa subunit [KO:K10741]
100659253  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
100664093  RFC4; replication factor C subunit 4 [KO:K10755]
100674743  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
100663797  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
100654256  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
100654423  RNASEH2A; ribonuclease H2 subunit A isoform X3 [KO:K10743] [EC:3.1.26.4]
100675767  RNASEH2B; LOW QUALITY PROTEIN: ribonuclease H2 subunit B [KO:K10744]
100659944  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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