KEGG   PATHWAY: lve03050
Entry
lve03050                    Pathway                                
Name
Proteasome - Lipotes vexillifer (Yangtze River dolphin)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
lve03050  Proteasome
lve03050

Other DBs
GO: 0000502
Organism
Lipotes vexillifer (Yangtze River dolphin) [GN:lve]
Gene
103068356  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
103068391  PSME1; proteasome activator complex subunit 1 isoform X1 [KO:K06696]
103068482  PSMA3; proteasome subunit alpha type-3 isoform X1 [KO:K02727] [EC:3.4.25.1]
103069007  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
103069329  PSME2; proteasome activator complex subunit 2 [KO:K06697]
103070206  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
103070666  PSMC6; 26S protease regulatory subunit 10B [KO:K03064]
103072472  [KO:K06697]
103073250  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 isoform X1 [KO:K03037]
103074176  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 isoform X1 [KO:K03039]
103074219  PSMC3; 26S protease regulatory subunit 6A [KO:K03065]
103075519  PSME3; proteasome activator complex subunit 3 isoform X1 [KO:K06698]
103076910  PSMC5; 26S protease regulatory subunit 8 [KO:K03066]
103078592  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
103079483  POMP; proteasome maturation protein [KO:K11599]
103080335  PSME4; proteasome activator complex subunit 4 [KO:K06699]
103080608  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
103081322  PSMA8; proteasome subunit alpha type-7-like [KO:K02731] [EC:3.4.25.1]
103081489  PSMC1; 26S protease regulatory subunit 4 isoform X1 [KO:K03062]
103081742  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
103081848  PSMB2; proteasome subunit beta type-2 isoform X1 [KO:K02734] [EC:3.4.25.1]
103082326  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
103082498  [KO:K03035]
103082551  PSMA5; proteasome subunit alpha type-5 isoform X1 [KO:K02729] [EC:3.4.25.1]
103082949  PSMB10; proteasome subunit beta type-10 [KO:K02733] [EC:3.4.25.1]
103083250  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
103084339  PSMB8; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
103084895  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
103084897  PSMB9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
103085033  PSMB5; proteasome subunit beta type-5 isoform X1 [KO:K02737] [EC:3.4.25.1]
103085308  PSMC2; LOW QUALITY PROTEIN: 26S protease regulatory subunit 7 [KO:K03061]
103085475  PSMB11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
103085542  IFNG; interferon gamma [KO:K04687]
103085858  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 isoform X1 [KO:K03028]
103086271  PSMC4; 26S protease regulatory subunit 6B isoform X1 [KO:K03063]
103087425  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693]
103089187  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
103090213  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
103090266  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
103090565  PSMA4; proteasome subunit alpha type-4 isoform X1 [KO:K02728] [EC:3.4.25.1]
103090592  PSMA7; proteasome subunit alpha type-7 isoform X1 [KO:K02731] [EC:3.4.25.1]
103090820  [KO:K11599]
103090952  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
103091366  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
103091442  [KO:K03038]
103091594  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
103091596  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
lve04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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