KEGG   PATHWAY: lve04120
Entry
lve04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Lipotes vexillifer (Yangtze River dolphin)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
lve04120  Ubiquitin mediated proteolysis
lve04120

Other DBs
GO: 0016567
Organism
Lipotes vexillifer (Yangtze River dolphin) [GN:lve]
Gene
103068347  [KO:K10447]
103068411  [KO:K03873]
103068585  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
103068611  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
103068806  [KO:K03350]
103068893  UBA6; ubiquitin-like modifier-activating enzyme 6-like [KO:K10699] [EC:6.2.1.45]
103069053  [KO:K03358]
103069089  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
103069221  CUL5; cullin-5 [KO:K10612]
103069337  ANAPC7; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7 [KO:K03354]
103069388  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
103069441  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
103069510  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
103069536  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
103069582  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
103069705  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
103069736  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
103069875  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
103069877  FBXO4; F-box only protein 4 [KO:K10291]
103069889  [KO:K03873]
103069946  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
103070029  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
103070169  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
103070363  TCEB1; transcription elongation factor B polypeptide 1 [KO:K03872]
103070455  UBE2O; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 O [KO:K10581] [EC:2.3.2.24]
103070612  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
103070624  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103070841  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
103070988  CUL1; cullin-1 isoform X1 [KO:K03347]
103071051  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
103071052  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
103071502  [KO:K02207] [EC:2.3.2.23]
103071504  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
103071535  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
103071664  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
103071774  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
103071805  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
103072054  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
103072137  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
103072196  ANAPC1; anaphase-promoting complex subunit 1-like [KO:K03348]
103072417  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
103072426  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
103072434  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
103072488  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
103072527  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
103072550  BIRC6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
103073168  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
103073348  CUL4A; cullin-4A [KO:K10609]
103073470  [KO:K10605] [EC:2.3.2.27]
103073550  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
103073568  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
103074429  SKP1; LOW QUALITY PROTEIN: S-phase kinase-associated protein 1 [KO:K03094]
103074974  CUL2; cullin-2 isoform X1 [KO:K03870]
103075274  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
103075299  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
103075604  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
103076241  TRIM32; E3 ubiquitin-protein ligase TRIM32 isoform X1 [KO:K10607] [EC:2.3.2.27]
103076297  WWP1; LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
103076303  UBB; polyubiquitin-C isoform X1 [KO:K04551]
103076307  [KO:K10595] [EC:2.3.2.26]
103076384  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
103076438  [KO:K02977]
103076597  [KO:K02977]
103076726  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
103076852  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
103077058  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
103077482  FBXO2; F-box only protein 2 [KO:K10099]
103078032  NEDD4; E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
103078180  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
103078679  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
103078964  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
103079061  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
103079116  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
103079583  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
103079783  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
103079969  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
103080017  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
103080023  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
103080032  HERC4; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
103080183  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
103080410  CUL7; cullin-7 isoform X1 [KO:K10613]
103080565  VHL; LOW QUALITY PROTEIN: von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase [KO:K03871]
103080615  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
103080774  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
103080937  TCEB2; transcription elongation factor B polypeptide 2 [KO:K03873]
103081012  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
103081104  CDC20; cell division cycle protein 20 homolog [KO:K03363]
103081109  BRCA1; breast cancer type 1 susceptibility protein homolog [KO:K10605] [EC:2.3.2.27]
103081431  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
103082023  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
103082062  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
103082173  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
103082495  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
103083057  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
103083100  [KO:K02927]
103083385  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
103083966  CBLB; E3 ubiquitin-protein ligase CBL-B-like [KO:K22517] [EC:2.3.2.27]
103084354  DET1; DET1 homolog isoform X1 [KO:K10571]
103084840  CUL3; cullin-3 [KO:K03869]
103084930  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
103085016  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
103085092  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
103085373  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
103085565  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
103085610  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
103085633  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
103086067  [KO:K03357]
103086221  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
103086224  HUWE1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
103086414  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
103086598  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
103086865  [KO:K04649] [EC:2.3.2.23]
103086871  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
103086904  AIRE; autoimmune regulator [KO:K10603]
103087142  BIRC2; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 2 [KO:K16060]
103087191  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
103087264  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
103087564  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
103087771  CUL4B; cullin-4B isoform X1 [KO:K10609]
103087883  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
103087932  CDC23; cell division cycle protein 23 homolog [KO:K03355]
103087993  RFWD2; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
103088040  DDB1; DNA damage-binding protein 1 [KO:K10610]
103088555  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
103088763  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
103088795  [KO:K03175] [EC:2.3.2.27]
103089340  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
103089371  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
103089381  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
103089392  UBE2A; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
103089530  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
103089548  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
103089663  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
103089681  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
103089815  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
103089846  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
103089950  [KO:K04649] [EC:2.3.2.23]
103090160  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
103090202  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
103090235  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
103090259  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
103090291  [KO:K03358]
103090340  PML; protein PML [KO:K10054] [EC:2.3.2.-]
103090591  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
103090703  [KO:K03094]
103090749  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
103090829  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
103091133  RCHY1; LOW QUALITY PROTEIN: ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase [KO:K10144] [EC:2.3.2.27]
103091288  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
103091530  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
lve03050  Proteasome
KO pathway
ko04120   

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