KEGG   PATHWAY: meis00020
Entry
meis00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosphaera sp. ISO3-F5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
meis00020  Citrate cycle (TCA cycle)
meis00020

Module
meis_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:meis00020]
Other DBs
GO: 0006099
Organism
Methanosphaera sp. ISO3-F5 [GN:meis]
Gene
PXD04_02245  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
PXD04_00125  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PXD04_00130  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PXD04_00135  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
PXD04_00120  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
PXD04_06490  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PXD04_00140  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PXD04_08025  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
PXD04_08030  2Fe-2S iron-sulfur cluster-binding protein [KO:K00240] [EC:1.3.5.1]
PXD04_05510  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
PXD04_07375  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
PXD04_06090  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PXD04_10460  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
PXD04_01765  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
PXD04_05470  porA; pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
PXD04_05475  porB; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
PXD04_05460  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
PXD04_05465  porD; pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
meis00010  Glycolysis / Gluconeogenesis
meis00061  Fatty acid biosynthesis
meis00071  Fatty acid degradation
meis00190  Oxidative phosphorylation
meis00220  Arginine biosynthesis
meis00250  Alanine, aspartate and glutamate metabolism
meis00280  Valine, leucine and isoleucine degradation
meis00350  Tyrosine metabolism
meis00470  D-Amino acid metabolism
meis00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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