KEGG   PATHWAY: mez00020
Entry
mez00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanocella conradii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mez00020  Citrate cycle (TCA cycle)
mez00020

Module
mez_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mez00020]
Other DBs
GO: 0006099
Organism
Methanocella conradii [GN:mez]
Gene
Mtc_0757  pycB; pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
Mtc_0840  porC-1; pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mtc_0841  porD-1; pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Mtc_0842  porA-1; pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Mtc_0843  porB-1; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Mtc_0899  fumB; fumarate hydratase beta subunit, Fe-S type [KO:K01678] [EC:4.2.1.2]
Mtc_0900  fumA; fumarate hydratase alpha subunit, Fe-S type [KO:K01677] [EC:4.2.1.2]
Mtc_1353  icd; Isocitrate dehydrogenase (NADP) [KO:K00030] [EC:1.1.1.41]
Mtc_1389  [KO:K05942] [EC:2.3.3.3]
Mtc_1763  porD-2; pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Mtc_1764  porC-2; pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mtc_1765  porA-2; pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Mtc_1766  porB-2; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Mtc_1890  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Mtc_1891  pdhB; pyruvate dehydrogenase complex E1, dehydrogenase [KO:K00162] [EC:1.2.4.1]
Mtc_1892  pdhC; pyruvate dehydrogenase complex E2, dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Mtc_1893  pdhD; pyruvate dehydrogenase complex E3, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mez00010  Glycolysis / Gluconeogenesis
mez00071  Fatty acid degradation
mez00190  Oxidative phosphorylation
mez00220  Arginine biosynthesis
mez00250  Alanine, aspartate and glutamate metabolism
mez00280  Valine, leucine and isoleucine degradation
mez00350  Tyrosine metabolism
mez00470  D-Amino acid metabolism
mez00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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