KEGG   PATHWAY: mja00020
Entry
mja00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanocaldococcus jannaschii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mja00020  Citrate cycle (TCA cycle)
mja00020

Module
mja_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mja00020]
Other DBs
GO: 0006099
Organism
Methanocaldococcus jannaschii [GN:mja]
Gene
MJ_0636  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MJ_0276  2-ketoglutarate ferredoxin oxidoreductase, subunit alpha (korA) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MJ_0537  2-ketoglutarate ferredoxin oxidoreductase, subunit beta (korB) [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MJ_0536  2-ketoglutarate ferredoxin oxidoreductase, subunit gamma (korG) [KO:K00177] [EC:1.2.7.3]
MJ_0146  2-ketoglutarate ferredoxin oxidoreductase, subunit delta (korD) [KO:K00176] [EC:1.2.7.3]
MJ_1246  succinyl-CoA synthetase, alpha subunit (sucD) [KO:K01902] [EC:6.2.1.5]
MJ_0210  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MJ_1294  tartrate dehydratase, subunit alpha (ttdA) [KO:K01677] [EC:4.2.1.2]
MJ_0617  tartrate dehydratse, subunit beta (ttdB) [KO:K01678] [EC:4.2.1.2]
MJ_0490  L-lactate dehydrogenase EGAD [KO:K00024] [EC:1.1.1.37]
MJ_1229  biotin carboxylase (accC) [KO:K01959] [EC:6.4.1.1]
MJ_1231  oxaloacetate decarboxylase alpha chain (oadA) [KO:K01960] [EC:6.4.1.1]
MJ_0267  pyruvate ferredoxin oxidoreductase, subunit alpha (porA) [KO:K00169] [EC:1.2.7.1]
MJ_0266  pyruvate ferredoxin oxidoreductase, subunit beta (porB) [KO:K00170] [EC:1.2.7.1]
MJ_0269  pyruvate ferredoxin oxidoreductase, subunit gamma (porG) [KO:K00172] [EC:1.2.7.1]
MJ_0268  pyruvate ferredoxin oxidoreductase, subunit delta (porD) [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mja00010  Glycolysis / Gluconeogenesis
mja00053  Ascorbate and aldarate metabolism
mja00071  Fatty acid degradation
mja00190  Oxidative phosphorylation
mja00220  Arginine biosynthesis
mja00250  Alanine, aspartate and glutamate metabolism
mja00280  Valine, leucine and isoleucine degradation
mja00350  Tyrosine metabolism
mja00470  D-Amino acid metabolism
mja00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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