KEGG   PATHWAY: mmil00020
Entry
mmil00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobrevibacter millerae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmil00020  Citrate cycle (TCA cycle)
mmil00020

Module
mmil_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmil00020]
Other DBs
GO: 0006099
Organism
Methanobrevibacter millerae [GN:mmil]
Gene
sm9_0335  gor1; glutathione-disulfide reductase Gor1 [KO:K00382] [EC:1.8.1.4]
sm9_0401  fumA1; fumarate hydratase FumA1 [KO:K01677] [EC:4.2.1.2]
sm9_0404  porB; pyruvate ferredoxin oxidoreductase beta subunit PorB [KO:K00170] [EC:1.2.7.1]
sm9_0405  porA; pyruvate ferredoxin oxidoreductase alpha subunit PorA [KO:K00169] [EC:1.2.7.1]
sm9_0406  porD; pyruvate ferredoxin oxidoreductase delta subunit PorD [KO:K00171] [EC:1.2.7.1]
sm9_0407  porC; pyruvate ferredoxin oxidoreductase gamma subunit PorC [KO:K00172] [EC:1.2.7.1]
sm9_0565  fumA2; fumarate hydratase FumA2 [KO:K01677] [EC:4.2.1.2]
sm9_0823  sucD; succinate-CoA ligase alpha subunit SucD [KO:K01902] [EC:6.2.1.5]
sm9_1029  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
sm9_1691  pycA; pyruvate carboxylase subunit A PycA [KO:K01959] [EC:6.4.1.1]
sm9_1695  fumA3; fumarate hydratase FumA3 [KO:K01678] [EC:4.2.1.2]
sm9_1874  sucC; succinyl-CoA synthetase beta subunit SucC [KO:K01903] [EC:6.2.1.5]
sm9_1875  korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma KorC [KO:K00177] [EC:1.2.7.3]
sm9_1876  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
sm9_1877  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
sm9_1878  korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta KorD [KO:K00176] [EC:1.2.7.3]
sm9_1879  fumA4; fumarate hydratase FumA4 [KO:K01678] [EC:4.2.1.2]
sm9_1890  pycB; pyruvate carboxylase subunit B PycB [KO:K01960] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmil00010  Glycolysis / Gluconeogenesis
mmil00061  Fatty acid biosynthesis
mmil00071  Fatty acid degradation
mmil00190  Oxidative phosphorylation
mmil00220  Arginine biosynthesis
mmil00250  Alanine, aspartate and glutamate metabolism
mmil00280  Valine, leucine and isoleucine degradation
mmil00350  Tyrosine metabolism
mmil00470  D-Amino acid metabolism
mmil00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system